5X0S | pdb_00005x0s

Solution NMR structure of peptide toxin SsTx from Scolopendra subspinipes mutilans


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 5X0S

This is version 1.4 of the entry. See complete history

Literature

Centipedes subdue giant prey by blocking KCNQ channels

Luo, L.Li, B.Wang, S.Wu, F.Wang, X.Liang, P.Ombati, R.Chen, J.Lu, X.Cui, J.Lu, Q.Zhang, L.Zhou, M.Tian, C.Yang, S.Lai, R.

(2018) Proc Natl Acad Sci U S A 115: 1646-1651

  • DOI: https://doi.org/10.1073/pnas.1714760115
  • Primary Citation Related Structures: 
    5X0S

  • PubMed Abstract: 

    Centipedes can subdue giant prey by using venom, which is metabolically expensive to synthesize and thus used frugally through efficiently disrupting essential physiological systems. Here, we show that a centipede ( Scolopendra subspinipes mutilans , ∼3 g) can subdue a mouse (∼45 g) within 30 seconds. We found that this observation is largely due to a peptide toxin in the venom, SsTx, and further established that SsTx blocks KCNQ potassium channels to exert the lethal toxicity. We also demonstrated that a KCNQ opener, retigabine, neutralizes the toxicity of a centipede's venom. The study indicates that centipedes' venom has evolved to simultaneously disrupt cardiovascular, respiratory, muscular, and nervous systems by targeting the broadly distributed KCNQ channels, thus providing a therapeutic strategy for centipede envenomation.


  • Organizational Affiliation
    • Key Laboratory of Animal Models and Human Disease Mechanisms of Chinese Academy of Sciences, Kunming Institute of Zoology, Kunming 650223, Yunnan, China.

Macromolecule Content 

  • Total Structure Weight: 6.03 kDa 
  • Atom Count: 422 
  • Modeled Residue Count: 53 
  • Deposited Residue Count: 53 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
SsTx53Scolopendra subspinipesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A2L0ART2 (Scolopendra mutilans)
Explore A0A2L0ART2 
Go to UniProtKB:  A0A2L0ART2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2L0ART2
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology of ChinaChina2013CB911304
National Natural Science Foundation of ChinaChina31470740

Revision History  (Full details and data files)

  • Version 1.0: 2018-01-24
    Type: Initial release
  • Version 1.1: 2018-02-07
    Changes: Database references
  • Version 1.2: 2018-02-28
    Changes: Database references
  • Version 1.3: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.4: 2024-10-23
    Changes: Data collection, Database references, Structure summary