5WY4 | pdb_00005wy4

Crystal structure of Chaetomium thermophilum Utp10 N-terminal domain

PDB DOI: https://doi.org/10.2210/pdb5WY4/pdb

Classification: RIBOSOMAL PROTEIN, NUCLEAR PROTEIN
Organism(s): Thermochaetoides thermophila DSM 1495
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-01-10 Released: 2018-01-24
Deposition Author(s): Chen, R., Zhu, X., Ye, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.264 (Depositor), 0.264 (DCC)
R-Value Work:
0.222 (Depositor), 0.223 (DCC)
R-Value Observed:
0.226 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5WY4

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Chaetomium thermophilum Utp10 N-terminal domain

Chen, R., Zhu, X., Ye, K.

To be published.

Macromolecule Content

Total Structure Weight: 52.23 kDa
Atom Count: 2,661
Modeled Residue Count: 331
Deposited Residue Count: 471
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein	A	471	Thermochaetoides thermophila DSM 1495	Mutation(s): 0 Gene Names: CTHT_0024640
UniProt
Find proteins for G0S5L1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S5L1 Go to UniProtKB: G0S5L1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S5L1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.264 (Depositor), 0.264 (DCC)
R-Value Work: 0.222 (Depositor), 0.223 (DCC)
R-Value Observed: 0.226 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.888	α = 90
b = 70.458	β = 90
c = 93.728	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	phasing
PHENIX	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2018-01-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-01-24
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.