5WPY | pdb_00005wpy

Solution Structure of KstB-PCP loaded with nicotinic acid in kosinostatin biosynthesis

PDB DOI: https://doi.org/10.2210/pdb5WPY/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Micromonospora okii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-11-21 Released: 2017-11-29
Deposition Author(s): Zhao, B., Lan, W., Tang, G., Cao, C.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 5WPY

This is version 1.2 of the entry. See complete history.

Literature

major solution Structure of KstB-PCP in kosinostatin biosynthesis

Zhao, B., Lan, W., Tang, G., Cao, C.

To be published.

Macromolecule Content

Total Structure Weight: 10.02 kDa
Atom Count: 703
Modeled Residue Count: 89
Deposited Residue Count: 89
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl carrier protein	A	89	Micromonospora okii	Mutation(s): 0
UniProt
Find proteins for A0A023GUP0 (Micromonospora okii) Explore A0A023GUP0 Go to UniProtKB: A0A023GUP0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A023GUP0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PN7 Query on PN7 Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide C₁₁ H₂₃ N₂ O₇ P S JDMUPRLRUUMCTL-SECBINFHSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-11-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-11-29
Type: Initial release
Version 1.1: 2023-06-14
Changes: Data collection, Database references, Other
Version 1.2: 2024-11-20
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.