5WH9 | pdb_00005wh9

Structure of BH1999 gentisyl-coenzyme A thioesterase

PDB DOI: https://doi.org/10.2210/pdb5WH9/pdb

Classification: HYDROLASE
Organism(s): Halalkalibacterium halodurans C-125
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-07-16 Released: 2018-10-10
Deposition Author(s): Finci, L.I., Allen, K.N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.264 (Depositor), 0.261 (DCC)
R-Value Work:
0.221 (Depositor), 0.218 (DCC)
R-Value Observed:
0.223 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 5WH9

This is version 1.2 of the entry. See complete history.

Literature

Structure of BH1999 gentisyl-coenzyme A thioesterase

Finci, L.I., Allen, K.N.

To be published.

Macromolecule Content

Total Structure Weight: 63.05 kDa
Atom Count: 4,170
Modeled Residue Count: 491
Deposited Residue Count: 552
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
4-hydroxybenzoyl-CoA thioesterase	A, B, C, D	138	Halalkalibacterium halodurans C-125	Mutation(s): 0 Gene Names: BH1999
UniProt
Find proteins for Q9KBC9 (Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Explore Q9KBC9 Go to UniProtKB: Q9KBC9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9KBC9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.264 (Depositor), 0.261 (DCC)
R-Value Work: 0.221 (Depositor), 0.218 (DCC)
R-Value Observed: 0.223 (Depositor)

Space Group: P 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.656	α = 90
b = 80.758	β = 90
c = 120.282	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
SAINT	data reduction
PROTEUM PLUS	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2018-10-10

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-10-10
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description, Structure summary
Version 1.2: 2024-10-30
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.