5WFU

Structural basis for the interaction of 14-3-3beta with Tricarboxylic Acid Cycle intermediate Malate

• PDB DOI: https://doi.org/10.2210/pdb5WFU/pdb

• Classification: PROTEIN BINDING
• Organism(s): Mus musculus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-07-12 Released: 2018-07-18 
• Deposition Author(s): Hou, Z.Q., Liu, X.Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.97 Å
• R-Value Free: 
  0.224 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.190 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.192 (Depositor) 

Literature

Structural basis for the interaction of 14-3-3beta with Tricarboxylic Acid Cycle intermediate Malate

Hou, Z.Q., Su, L.J., Liu, X.Y.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 3 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 113.01 kDa 
• Atom Count: 7,865 
• Modelled Residue Count: 934 
• Deposited Residue Count: 984 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
14-3-3 protein beta/alpha	A, B, C, D	246	Mus musculus	Mutation(s): 0  Gene Names: Ywhab
UniProt & NIH Common Fund Data Resources
Find proteins for Q9CQV8 (Mus musculus) Explore Q9CQV8  Go to UniProtKB:  Q9CQV8
IMPC:  MGI:1891917

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MLT (Subject of Investigation/LOI)	E [auth A], F [auth B], G [auth C], H [auth D]	D-MALATE C4 H6 O5 BJEPYKJPYRNKOW-UWTATZPHSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.97 Å
• R-Value Free:  0.224 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.190 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.192 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 256.392	α = 90
b = 85.604	β = 101.73
c = 56.066	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-07-18 
Deposition Author(s): Hou, Z.Q., Liu, X.Y.

Revision History  

• Version 1.0: 2018-07-18
  Type: Initial release
  
• Version 1.1: 2024-03-13
  Changes: Data collection, Database references, Refinement description