2-Se-T2/4-modified-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant
Fang, Z., Yang, F., Huang, Z.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribonuclease H | C [auth A] | 132 | Halalkalibacterium halodurans C-125 | Mutation(s): 1  Gene Names: rnhA, BH0863 EC: 3.1.26.4 | ![]() |
UniProt | |||||
Find proteins for Q9KEI9 (Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Explore Q9KEI9  Go to UniProtKB:  Q9KEI9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9KEI9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | A [auth B] | 6 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*AP*(US3)P*GP*(US3)P*CP*G)-3') | B [auth C] | 6 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | D [auth A], E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 80.686 | α = 90 |
b = 37.69 | β = 95.95 |
c = 62.18 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASER | phasing |