Cannibalism Among the Flavins: a Novel C-N Bond Cleavage in Riboflavin Catabolism Mediated by Flavin-Generated Superoxide Radical
Chakrabarty, Y., Bhandari, D.M., Zhao, B., Wood, J., Li, P., Begley, T.P.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Riboflavin Lyase | 461 | Herbiconiux | Mutation(s): 0  Gene Names: RcaE | ||
UniProt | |||||
Find proteins for A0A3B6UEK8 (Herbiconiux) Explore A0A3B6UEK8  Go to UniProtKB:  A0A3B6UEK8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A3B6UEK8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
9WY Query on 9WY | C [auth A], E [auth B] | 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-3-O-phosphono-D-ribitol C17 H21 N4 O9 P XTUPYSORVVXTTQ-AOUZGSJDSA-N | |||
RBF Query on RBF | D [auth A], F [auth B] | RIBOFLAVIN C17 H20 N4 O6 AUNGANRZJHBGPY-SCRDCRAPSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 74.97 | α = 90 |
b = 108.8 | β = 90 |
c = 125.08 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
iMOSFLM | data reduction |
PHENIX | model building |
iMOSFLM | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) | United States | DK44083 |
Robert A. Welch Foundation | United States | A-0034 |