5TSE | pdb_00005tse

2.35 Angstrom Crystal Structure Minor Lipoprotein from Acinetobacter baumannii.

• PDB DOI: https://doi.org/10.2210/pdb5TSE/pdb

• Classification: LIPID BINDING PROTEIN
• Organism(s): Acinetobacter baumannii
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2016-10-28 Released: 2016-11-09 
• Deposition Author(s): Minasov, G., Shuvalova, L., Kiryukhina, O., Dubrovska, I., Grimshaw, S., Kwon, K., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.35 Å
• R-Value Free: 
  0.263 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.216 (Depositor), 0.216 (DCC) 
• R-Value Observed: 
  0.218 (Depositor) 

Starting Model: experimental

Literature

2.35 Angstrom Crystal Structure Minor Lipoprotein from Acinetobacter baumannii.

Minasov, G., Shuvalova, L., Kiryukhina, O., Dubrovska, I., Grimshaw, S., Kwon, K., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 48.84 kDa 
• Atom Count: 3,280 
• Modeled Residue Count: 397 
• Deposited Residue Count: 429 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LPS-assembly lipoprotein LptE	A, B, C	143	Acinetobacter baumannii	Mutation(s): 0  Gene Names:  lptE, A7A43_01670, AB988_1847, ACX60_15420, APD31_17935, AQ480_10880, AQ482_00945, AZE33_02665, IOMTU433_3277, IX87_17195, LV38_00030, TE32_16750
UniProt
Find proteins for V5VH20 (Acinetobacter baumannii) Explore V5VH20  Go to UniProtKB:  V5VH20

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FMT	D [auth A]	FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.35 Å
• R-Value Free:  0.263 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.216 (Depositor), 0.216 (DCC) 
• R-Value Observed: 0.218 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m35tse

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.806	α = 90
b = 68.806	β = 90
c = 96.586	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-11-09 
Deposition Author(s): Minasov, G., Shuvalova, L., Kiryukhina, O., Dubrovska, I., Grimshaw, S., Kwon, K., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2016-11-09
  Type: Initial release
  
• Version 1.1: 2016-11-16
  Changes: Database references, Structure summary
• Version 1.2: 2023-10-04
  Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary