Experimental and Computational Identification of Naive Binders to a TIM-Barrel Protein Scaffold
Allison, B.A., Bender, B.J., Ganguly, S., Geanes, A.R., Meiler, J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Imidazole glycerol phosphate synthase subunit HisF | 275 | Thermotoga maritima MSB8 | Mutation(s): 2  Gene Names: hisF, TM_1036 EC: 4.1.3 | ||
UniProt | |||||
Find proteins for Q9X0C6 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0C6  Go to UniProtKB:  Q9X0C6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9X0C6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | C [auth A], D [auth A], E [auth B], F [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 96.505 | α = 90 |
b = 96.505 | β = 90 |
c = 154.228 | γ = 120 |
Software Name | Purpose |
---|---|
XPREP | data reduction |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01 GM099842 |