Download MendeleyConformational Sampling Differences across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin
Dong, M., Bahnson, B.J.To be published.
5T9Q
Conformational Sampling Differences across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin
- PDB DOI: https://doi.org/10.2210/pdb5T9Q/pdb
- Classification: HYDROLASE
- Organism(s): Bacillus thermoproteolyticus
- Expression System: Bacillus subtilis
- Mutation(s): No
- Deposited: 2016-09-09 Released: 2017-08-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.206
- R-Value Work: 0.151
- R-Value Observed: 0.154
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thermolysin | 316 | Bacillus thermoproteolyticus | Mutation(s): 0 Gene Names: npr EC: 3.4.24.27 |  | |
UniProt | |||||
Find proteins for P00800 (Bacillus thermoproteolyticus) Explore P00800 Go to UniProtKB: P00800 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00800 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| LYS Query on LYS | H [auth A] | LYSINE C6 H15 N2 O2 KDXKERNSBIXSRK-YFKPBYRVSA-O |  | ||
| VAL Query on VAL | G [auth A] | VALINE C5 H11 N O2 KZSNJWFQEVHDMF-BYPYZUCNSA-N |  | ||
| PO4 Query on PO4 | I [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| ZN Query on ZN | F [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CA Query on CA | B [auth A], C [auth A], D [auth A], E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.206
- R-Value Work: 0.151
- R-Value Observed: 0.154
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 93.708 | α = 90 |
| b = 93.708 | β = 90 |
| c = 130.866 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Coot | model building |
| HKL-2000 | data scaling |
| REFMAC | phasing |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2017-08-30 Deposition Author(s): Dong, M., Bahnson, B.J.
Revision History (Full details and data files)
- Version 1.0: 2017-08-30
Type: Initial release - Version 1.1: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description
