5T9D | pdb_00005t9d

Structure of PCNA acetylated on K20

PDB DOI: https://doi.org/10.2210/pdb5T9D/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-09-09 Released: 2017-04-05
Deposition Author(s): Couture, J.F., Tremblay, V., Brunzelle, J.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.27 Å
R-Value Free:
0.231 (Depositor), 0.243 (DCC)
R-Value Work:
0.213 (Depositor), 0.226 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Structure of PCNA acetylated on K20

Couture, J.F., Tremblay, V., Brunzelle, J.S.

To be published.

Macromolecule Content

Total Structure Weight: 86.73 kDa
Atom Count: 5,552
Modeled Residue Count: 744
Deposited Residue Count: 774
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Proliferating cell nuclear antigen	A, B, C	258	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: POL30, YBR088C, YBR0811
UniProt
Find proteins for P15873 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P15873 Go to UniProtKB: P15873
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P15873
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.27 Å
R-Value Free: 0.231 (Depositor), 0.243 (DCC)
R-Value Work: 0.213 (Depositor), 0.226 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.22	α = 90
b = 122.38	β = 90
c = 122.24	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-04-05

Deposition Author(s):

Brunzelle, J.S.

Revision History (Full details and data files)

Version 1.0: 2017-04-05
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.