5SXO | pdb_00005sxo

1.35 angstrom resolution crystal structure of beta-ketoacyl-ACP synthase II (FabF) from Listeria monocytogenes

PDB DOI: https://doi.org/10.2210/pdb5SXO/pdb

Classification: TRANSFERASE
Organism(s): Listeria monocytogenes ATCC 19115
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-08-09 Released: 2016-11-02
Deposition Author(s): Soares da Costa, T.P., Nanson, J.D., Forwood, J.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.35 Å
R-Value Free:
0.165 (Depositor), 0.165 (DCC)
R-Value Work:
0.148 (Depositor), 0.148 (DCC)
R-Value Observed:
0.149 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

1.35 angstrom resolution crystal structure of beta-ketoacyl-ACP synthase II (FabF) from Listeria monocytogenes

Soares da Costa, T.P., Nanson, J.D., Forwood, J.K.

To be published.

Macromolecule Content

Total Structure Weight: 44.33 kDa
Atom Count: 3,448
Modeled Residue Count: 409
Deposited Residue Count: 413
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-oxoacyl-[acyl-carrier-protein] synthase 2	A	413	Listeria monocytogenes ATCC 19115	Mutation(s): 0 Gene Names: LmNIHS28_01559, M643_06390 EC: 2.3.1.179
UniProt
Find proteins for A0A0B8RFI6 (Listeria monocytogenes) Explore A0A0B8RFI6 Go to UniProtKB: A0A0B8RFI6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0B8RFI6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.35 Å
R-Value Free: 0.165 (Depositor), 0.165 (DCC)
R-Value Work: 0.148 (Depositor), 0.148 (DCC)
R-Value Observed: 0.149 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.75	α = 90
b = 73.75	β = 90
c = 170.27	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHASER	phasing
Aimless	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-11-02

Deposition Author(s):

Soares da Costa, T.P.

Revision History (Full details and data files)

Version 1.0: 2016-11-02
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.