5SUV | pdb_00005suv

Crystal structure of holo-[acyl-carrier-protein] synthase (AcpS) from Neisseria meningitidis in complex with Coenzyme A

PDB DOI: https://doi.org/10.2210/pdb5SUV/pdb

Classification: TRANSFERASE
Organism(s): Neisseria meningitidis FAM18
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-08-04 Released: 2017-09-13
Deposition Author(s): Nanson, J.D., Forwood, J.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free:
0.228 (Depositor), 0.232 (DCC)
R-Value Work:
0.188 (Depositor), 0.193 (DCC)
R-Value Observed:
0.190 (Depositor)

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Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of holo-[acyl-carrier-protein] synthase (AcpS) from Neisseria meningitidis in complex with Coenzyme A

Nanson, J.D., Forwood, J.K.

To be published.

Macromolecule Content

Total Structure Weight: 43.6 kDa
Atom Count: 3,333
Modeled Residue Count: 377
Deposited Residue Count: 378
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Holo-[acyl-carrier-protein] synthase	A, B, C	126	Neisseria meningitidis FAM18	Mutation(s): 0 Gene Names: acpS, NMC1700 EC: 2.7.8.7
UniProt
Find proteins for A1KVH5 (Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18)) Explore A1KVH5 Go to UniProtKB: A1KVH5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A1KVH5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
COA Query on COA Download:Ideal Coordinates CCD File SDF format, chain F [auth C] SDF format, chain E [auth B] SDF format, chain D [auth B] MOL2 format, chain F [auth C] MOL2 format, chain E [auth B] MOL2 format, chain D [auth B] mmCIF format, chain F [auth C] mmCIF format, chain E [auth B] mmCIF format, chain D [auth B]	D [auth B], E [auth B], F [auth C]	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain D [auth B] Focus chain E [auth B] Focus chain F [auth C] Interactions & Density Focus chain D [auth B] Focus chain E [auth B] Focus chain F [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.228 (Depositor), 0.232 (DCC)
R-Value Work: 0.188 (Depositor), 0.193 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.507	α = 90
b = 92.686	β = 90
c = 92.902	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-09-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-09-13
Type: Initial release
Version 1.1: 2024-03-06
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.