PanDDA analysis group deposition
Dubianok, Y., Krojer, T., Kovacs, H., Moriaud, F., Wright, N., Strain-Damerell, C., Burgess-Brown, N., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
ADP-sugar pyrophosphatase | 209 | Homo sapiens | Mutation(s): 0 Gene Names: NUDT5, NUDIX5, HSPC115 EC: 3.6.1.13 (PDB Primary Data), 3.6.1.58 (PDB Primary Data), 2.7.7.96 (PDB Primary Data) | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UKK9 (Homo sapiens) Explore Q9UKK9 Go to UniProtKB: Q9UKK9 | |||||
PHAROS: Q9UKK9 GTEx: ENSG00000165609 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UKK9 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PWD Query on PWD | H [auth A], M [auth B], Q [auth C] | 5-fluoro-1H-pyrrolo[2,3-b]pyridine C7 H5 F N2 BALBNSFYMXBWNM-UHFFFAOYSA-N | |||
EDO Query on EDO | I [auth A], J [auth B], N [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | G [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG Query on MG | E [auth A] F [auth A] K [auth B] L [auth B] O [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.083 | α = 79.55 |
b = 59.814 | β = 81.29 |
c = 79.586 | γ = 75.78 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
REFMAC | phasing |