5OR5 | pdb_00005or5

NMR structure of the complex formed by an engineered region 2 of sigmaE in complex with GTAAAA

PDB DOI: https://doi.org/10.2210/pdb5OR5/pdb
NAKB: 5OR5
BMRB: 34172

Classification: TRANSCRIPTION
Organism(s): Escherichia coli K-12, Bacillus subtilis subsp. subtilis str. 168, synthetic construct
Expression System: Escherichia coli BL21(DE3), synthetic construct
Mutation(s): No

Deposited: 2017-08-15 Released: 2018-06-27
Deposition Author(s): Campagne, S., Vorholt, J.A., Allain, F.H.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 30
Conformers Submitted: 13
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 5OR5

This is version 1.3 of the entry. See complete history.

Literature

Engineered promoter selectivity of an ECF sigma factor

Campagne, S., Vorholt, J.A., Allain, F.H.

Not Published

Macromolecule Content

Total Structure Weight: 12.75 kDa
Atom Count: 899
Modeled Residue Count: 101
Deposited Residue Count: 101
Unique protein chains: 1
Unique nucleic acid chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ECF RNA polymerase sigma-E factor,ECF RNA polymerase sigma factor SigW,ECF RNA polymerase sigma-E factor	A	95	Escherichia coli K-12, Bacillus subtilis subsp. subtilis str. 168	Mutation(s): 0 Gene Names: rpoE, sigE, b2573, JW2557, sigW, ybbL, BSU01730
UniProt
Find proteins for P0AGB6 (Escherichia coli (strain K12)) Explore P0AGB6 Go to UniProtKB: P0AGB6
Find proteins for Q45585 (Bacillus subtilis (strain 168)) Explore Q45585 Go to UniProtKB: Q45585
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	Q45585 P0AGB6
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by: Sequence

Molecule	Chains	Length	Organism	Image
Entity ID: 2
DNA (5'-D(GPTPAPAPAPA)-3')	B	6	synthetic construct
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 30
Conformers Submitted: 13
Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2018-06-27

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-06-27
Type: Initial release
Version 1.1: 2019-05-08
Changes: Data collection
Version 1.2: 2019-07-10
Changes: Data collection, Database references
Version 1.3: 2024-05-15
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.