5OGT | pdb_00005ogt

Thermus scotoductus SA-01 Ene-reductase triple mutant TsER_C25D_I67T_A102H

PDB DOI: https://doi.org/10.2210/pdb5OGT/pdb

Classification: OXIDOREDUCTASE
Organism(s): Thermus scotoductus SA-01
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2017-07-13 Released: 2018-08-01
Deposition Author(s): Opperman, D.J., Hoebenreich, S., Nett, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.244 (Depositor), 0.260 (DCC)
R-Value Work:
0.204 (Depositor)
R-Value Observed:
0.206 (Depositor)

Starting Model: experimental
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Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Thermus scotoductus SA-01 Ene-reductase triple mutant TsER_C25D_I67T_A102H

Opperman, D.J., Hoebenreich, S., Nett, N.

To be published.

Macromolecule Content

Total Structure Weight: 154.2 kDa
Atom Count: 11,407
Modeled Residue Count: 1,392
Deposited Residue Count: 1,396
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chromate reductase	A, B, C, D	349	Thermus scotoductus SA-01	Mutation(s): 3 Gene Names: chrR
UniProt
Find proteins for E8PRF1 (Thermus scotoductus (strain ATCC 700910 / SA-01)) Explore E8PRF1 Go to UniProtKB: E8PRF1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	E8PRF1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FMN Query on FMN Download:Ideal Coordinates CCD File SDF format, chain H [auth D] SDF format, chain G [auth C] SDF format, chain F [auth B] SDF format, chain E [auth A] MOL2 format, chain H [auth D] MOL2 format, chain G [auth C] MOL2 format, chain F [auth B] MOL2 format, chain E [auth A] mmCIF format, chain H [auth D] mmCIF format, chain G [auth C] mmCIF format, chain F [auth B] mmCIF format, chain E [auth A]	E [auth A], F [auth B], G [auth C], H [auth D]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Interactions Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.244 (Depositor), 0.260 (DCC)
R-Value Work: 0.204 (Depositor)
R-Value Observed: 0.206 (Depositor)

Space Group: P 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 100.27	α = 90
b = 103.24	β = 113.28
c = 102.72	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2018-08-01

Deposition Author(s):

Hoebenreich, S.

Revision History (Full details and data files)

Version 1.0: 2018-08-01
Type: Initial release
Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.