5O34 | pdb_00005o34

ThnE from S.clavuligerus

PDB DOI: https://doi.org/10.2210/pdb5O34/pdb

Classification: LYASE
Organism(s): Streptantibioticus cattleyicolor
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-05-23 Released: 2018-06-13
Deposition Author(s): Valegard, K., Andersson, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free:
0.234 (Depositor), 0.240 (DCC)
R-Value Work:
0.213 (Depositor), 0.220 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Structure of ThnE from the thienamycin biosynthesis.

Valegard, K.

To be published.

Macromolecule Content

Total Structure Weight: 97 kDa
Atom Count: 4,657
Modeled Residue Count: 608
Deposited Residue Count: 882
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-CoA hydratase carB homologue	A, B, C	294	Streptantibioticus cattleyicolor	Mutation(s): 0
UniProt
Find proteins for Q83XP9 (Streptantibioticus cattleyicolor) Explore Q83XP9 Go to UniProtKB: Q83XP9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q83XP9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.234 (Depositor), 0.240 (DCC)
R-Value Work: 0.213 (Depositor), 0.220 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 113.22	α = 90
b = 113.22	β = 90
c = 158.13	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-06-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-06-13
Type: Initial release
Version 1.1: 2019-03-06
Changes: Data collection
Version 1.2: 2024-01-17
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.