5O30 | pdb_00005o30

Crystal structure of the novel halohydrin dehalogenase HheG

PDB DOI: https://doi.org/10.2210/pdb5O30/pdb

Classification: LYASE
Organism(s): Ilumatobacter coccineus YM16-304
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-05-23 Released: 2017-09-13
Deposition Author(s): Diederich, C., Schallmey, A., Blankenfeldt, W.
Funding Organization(s): German Federal Ministry of Economic Affairs and Energy (BMWi) within the AiF-ZIM funding scheme

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.203 (Depositor), 0.199 (DCC)
R-Value Work:
0.190 (Depositor), 0.186 (DCC)
R-Value Observed:
0.191 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5O30

This is version 2.0 of the entry. See complete history.

Literature

HheG, a Halohydrin Dehalogenase with Activity on Cyclic Epoxides

Koopmeiners, J., Diederich, C., Solarczek, J., Voss, H., Meyer, J., Blankenfeldt, W., Schallemy, A.

(2017) ACS Catal

DOI: https://doi.org/10.1021/acscatal.7b01854

Macromolecule Content

Total Structure Weight: 299.37 kDa
Atom Count: 20,263
Modeled Residue Count: 2,572
Deposited Residue Count: 2,820
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative oxidoreductase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	282	Ilumatobacter coccineus YM16-304	Mutation(s): 0 Gene Names: YM304_35350

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain K [auth A] MOL2 format, chain K [auth A] mmCIF format, chain K [auth A]	K [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain K [auth A] Interactions & Density Focus chain K [auth A]
ACT Query on ACT Download:Ideal Coordinates CCD File SDF format, chain L [auth B] SDF format, chain M [auth B] MOL2 format, chain L [auth B] MOL2 format, chain M [auth B] mmCIF format, chain L [auth B] mmCIF format, chain M [auth B]	L [auth B], M [auth B]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain L [auth B] Focus chain M [auth B] Interactions & Density Focus chain L [auth B] Focus chain M [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.203 (Depositor), 0.199 (DCC)
R-Value Work: 0.190 (Depositor), 0.186 (DCC)
R-Value Observed: 0.191 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 194.877	α = 90
b = 194.877	β = 90
c = 195.179	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
SHELXDE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2017-09-13

Deposition Author(s):

Blankenfeldt, W.

Funding Organization	Location	Grant Number
German Federal Ministry of Economic Affairs and Energy (BMWi) within the AiF-ZIM funding scheme	Germany	--

Revision History (Full details and data files)

Version 1.0: 2017-09-13
Type: Initial release
Version 1.1: 2018-05-02
Changes: Data collection
Version 2.0: 2024-05-08
Changes: Atomic model, Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.