5NSL | pdb_00005nsl

Structure of D80A-fructofuranosidase from Xanthophyllomyces dendrorhous complexed with fructose and hydroxytyrosol

PDB DOI: https://doi.org/10.2210/pdb5NSL/pdb

Classification: HYDROLASE
Organism(s): Phaffia rhodozyma
Expression System: Komagataella pastoris
Mutation(s): Yes

Deposited: 2017-04-26 Released: 2018-11-07
Deposition Author(s): Ramirez-Escudero, M., Sanz-Aparicio, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.189 (Depositor), 0.199 (DCC)
R-Value Work:
0.177 (Depositor), 0.187 (DCC)
R-Value Observed:
0.177 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 2.2 of the entry. See complete history.

Literature

Fructosylation of Hydroxytyrosol by the Beta-Fructofuranosidase from Xanthophyllomyces dendrorhous: Insights into the Molecular Basis of the Enzyme Specificity

Miquez, N., Ramirez-Escudero, M., Poveda, A., Ballesteros, O., Sanz-Aparicio, J., Plou, F.J.

(2018) ChemCatChem

DOI: https://doi.org/10.1002/cctc.201801171

Macromolecule Content

Total Structure Weight: 165.29 kDa
Atom Count: 12,353
Modeled Residue Count: 1,248
Deposited Residue Count: 1,330
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-fructofuranosidase	A, B	665	Phaffia rhodozyma	Mutation(s): 1 Gene Names: INV
UniProt
Find proteins for J7HDY4 (Phaffia rhodozyma) Explore J7HDY4 Go to UniProtKB: J7HDY4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	J7HDY4
Glycosylation
Glycosylation Sites: 14	Glycosylation Focus chain A Focus chain B
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	C, D, G	9		N-Glycosylation	Interactions Focus chain C Focus chain D Focus chain G Interactions & Density Focus chain C Focus chain D Focus chain G
Glycosylation Resources
GlyTouCan: G83161QT GlyCosmos: G83161QT GlyGen: G83161QT

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	E, H	2		N-Glycosylation	Interactions Focus chain E Focus chain H Interactions & Density Focus chain E Focus chain H
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	F	7		N-Glycosylation	Interactions Focus chain F Interactions & Density Focus chain F
Glycosylation Resources
GlyTouCan: G92805XC GlyCosmos: G92805XC GlyGen: G92805XC

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download:Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain K [auth A] SDF format, chain M [auth A] SDF format, chain N [auth A] SDF format, chain O [auth A] SDF format, chain P [auth A] SDF format, chain QB [auth B] SDF format, chain R [auth A] SDF format, chain RB [auth B] SDF format, chain S [auth A] SDF format, chain SB [auth B] SDF format, chain T [auth A] SDF format, chain TB [auth B] SDF format, chain U [auth A] SDF format, chain V [auth A] SDF format, chain VB [auth B] SDF format, chain WB [auth B] SDF format, chain XB [auth B] SDF format, chain YB [auth B] SDF format, chain ZB [auth B] SDF format, chain UB [auth B] SDF format, chain Q [auth A] SDF format, chain L [auth A] SDF format, chain AC [auth B] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain K [auth A] MOL2 format, chain M [auth A] MOL2 format, chain N [auth A] MOL2 format, chain O [auth A] MOL2 format, chain P [auth A] MOL2 format, chain QB [auth B] MOL2 format, chain R [auth A] MOL2 format, chain RB [auth B] MOL2 format, chain S [auth A] MOL2 format, chain SB [auth B] MOL2 format, chain T [auth A] MOL2 format, chain TB [auth B] MOL2 format, chain U [auth A] MOL2 format, chain V [auth A] MOL2 format, chain VB [auth B] MOL2 format, chain WB [auth B] MOL2 format, chain XB [auth B] MOL2 format, chain YB [auth B] MOL2 format, chain ZB [auth B] MOL2 format, chain UB [auth B] MOL2 format, chain Q [auth A] MOL2 format, chain L [auth A] MOL2 format, chain AC [auth B] mmCIF format, chain I [auth A] mmCIF format, chain J [auth A] mmCIF format, chain K [auth A] mmCIF format, chain M [auth A] mmCIF format, chain N [auth A] mmCIF format, chain O [auth A] mmCIF format, chain P [auth A] mmCIF format, chain QB [auth B] mmCIF format, chain R [auth A] mmCIF format, chain RB [auth B] mmCIF format, chain S [auth A] mmCIF format, chain SB [auth B] mmCIF format, chain T [auth A] mmCIF format, chain TB [auth B] mmCIF format, chain U [auth A] mmCIF format, chain V [auth A] mmCIF format, chain VB [auth B] mmCIF format, chain WB [auth B] mmCIF format, chain XB [auth B] mmCIF format, chain YB [auth B] mmCIF format, chain ZB [auth B] mmCIF format, chain UB [auth B] mmCIF format, chain Q [auth A] mmCIF format, chain L [auth A] mmCIF format, chain AC [auth B]	AC [auth B] I [auth A] J [auth A] K [auth A] L [auth A] AC [auth B], I [auth A], J [auth A], K [auth A], L [auth A], M [auth A], N [auth A], O [auth A], P [auth A], Q [auth A], QB [auth B], R [auth A], RB [auth B], S [auth A], SB [auth B], T [auth A], TB [auth B], U [auth A], UB [auth B], V [auth A], VB [auth B], WB [auth B], XB [auth B], YB [auth B], ZB [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain AC [auth B] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth A] Focus chain QB [auth B] Focus chain R [auth A] Focus chain RB [auth B] Focus chain S [auth A] Focus chain SB [auth B] Focus chain T [auth A] Focus chain TB [auth B] Focus chain U [auth A] Focus chain UB [auth B] Focus chain V [auth A] Focus chain VB [auth B] Focus chain WB [auth B] Focus chain XB [auth B] Focus chain YB [auth B] Focus chain ZB [auth B] Interactions & Density Focus chain AC [auth B] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth A] Focus chain QB [auth B] Focus chain R [auth A] Focus chain RB [auth B] Focus chain S [auth A] Focus chain SB [auth B] Focus chain T [auth A] Focus chain TB [auth B] Focus chain U [auth A] Focus chain UB [auth B] Focus chain V [auth A] Focus chain VB [auth B] Focus chain WB [auth B] Focus chain XB [auth B] Focus chain YB [auth B] Focus chain ZB [auth B]
FRU Query on FRU Download:Ideal Coordinates CCD File SDF format, chain BC [auth B] SDF format, chain W [auth A] MOL2 format, chain BC [auth B] MOL2 format, chain W [auth A] mmCIF format, chain BC [auth B] mmCIF format, chain W [auth A]	BC [auth B], W [auth A]	beta-D-fructofuranose C₆ H₁₂ O₆ RFSUNEUAIZKAJO-ARQDHWQXSA-N		Interactions Focus chain BC [auth B] Focus chain W [auth A] Interactions & Density Focus chain BC [auth B] Focus chain W [auth A]
975 Query on 975 Download:Ideal Coordinates CCD File SDF format, chain AA [auth A] SDF format, chain BA [auth A] SDF format, chain CA [auth A] SDF format, chain CC [auth B] SDF format, chain DA [auth A] SDF format, chain DC [auth B] SDF format, chain EA [auth A] SDF format, chain EC [auth B] SDF format, chain FC [auth B] SDF format, chain GA [auth A] SDF format, chain GC [auth B] SDF format, chain HA [auth A] SDF format, chain HC [auth B] SDF format, chain IA [auth A] SDF format, chain IC [auth B] SDF format, chain JA [auth A] SDF format, chain JC [auth B] SDF format, chain KA [auth A] SDF format, chain KC [auth B] SDF format, chain LC [auth B] SDF format, chain MA [auth A] SDF format, chain MC [auth B] SDF format, chain NA [auth A] SDF format, chain NC [auth B] SDF format, chain OA [auth A] SDF format, chain OC [auth B] SDF format, chain PA [auth A] SDF format, chain PC [auth B] SDF format, chain QA [auth A] SDF format, chain QC [auth B] SDF format, chain RA [auth A] SDF format, chain RC [auth B] SDF format, chain SA [auth A] SDF format, chain SC [auth B] SDF format, chain X [auth A] SDF format, chain Y [auth A] SDF format, chain Z [auth A] SDF format, chain LA [auth A] SDF format, chain FA [auth A] MOL2 format, chain AA [auth A] MOL2 format, chain BA [auth A] MOL2 format, chain CA [auth A] MOL2 format, chain CC [auth B] MOL2 format, chain DA [auth A] MOL2 format, chain DC [auth B] MOL2 format, chain EA [auth A] MOL2 format, chain EC [auth B] MOL2 format, chain FC [auth B] MOL2 format, chain GA [auth A] MOL2 format, chain GC [auth B] MOL2 format, chain HA [auth A] MOL2 format, chain HC [auth B] MOL2 format, chain IA [auth A] MOL2 format, chain IC [auth B] MOL2 format, chain JA [auth A] MOL2 format, chain JC [auth B] MOL2 format, chain KA [auth A] MOL2 format, chain KC [auth B] MOL2 format, chain LC [auth B] MOL2 format, chain MA [auth A] MOL2 format, chain MC [auth B] MOL2 format, chain NA [auth A] MOL2 format, chain NC [auth B] MOL2 format, chain OA [auth A] MOL2 format, chain OC [auth B] MOL2 format, chain PA [auth A] MOL2 format, chain PC [auth B] MOL2 format, chain QA [auth A] MOL2 format, chain QC [auth B] MOL2 format, chain RA [auth A] MOL2 format, chain RC [auth B] MOL2 format, chain SA [auth A] MOL2 format, chain SC [auth B] MOL2 format, chain X [auth A] MOL2 format, chain Y [auth A] MOL2 format, chain Z [auth A] MOL2 format, chain LA [auth A] MOL2 format, chain FA [auth A] mmCIF format, chain AA [auth A] mmCIF format, chain BA [auth A] mmCIF format, chain CA [auth A] mmCIF format, chain CC [auth B] mmCIF format, chain DA [auth A] mmCIF format, chain DC [auth B] mmCIF format, chain EA [auth A] mmCIF format, chain EC [auth B] mmCIF format, chain FC [auth B] mmCIF format, chain GA [auth A] mmCIF format, chain GC [auth B] mmCIF format, chain HA [auth A] mmCIF format, chain HC [auth B] mmCIF format, chain IA [auth A] mmCIF format, chain IC [auth B] mmCIF format, chain JA [auth A] mmCIF format, chain JC [auth B] mmCIF format, chain KA [auth A] mmCIF format, chain KC [auth B] mmCIF format, chain LC [auth B] mmCIF format, chain MA [auth A] mmCIF format, chain MC [auth B] mmCIF format, chain NA [auth A] mmCIF format, chain NC [auth B] mmCIF format, chain OA [auth A] mmCIF format, chain OC [auth B] mmCIF format, chain PA [auth A] mmCIF format, chain PC [auth B] mmCIF format, chain QA [auth A] mmCIF format, chain QC [auth B] mmCIF format, chain RA [auth A] mmCIF format, chain RC [auth B] mmCIF format, chain SA [auth A] mmCIF format, chain SC [auth B] mmCIF format, chain X [auth A] mmCIF format, chain Y [auth A] mmCIF format, chain Z [auth A] mmCIF format, chain LA [auth A] mmCIF format, chain FA [auth A]	AA [auth A] BA [auth A] CA [auth A] CC [auth B] DA [auth A] AA [auth A], BA [auth A], CA [auth A], CC [auth B], DA [auth A], DC [auth B], EA [auth A], EC [auth B], FA [auth A], FC [auth B], GA [auth A], GC [auth B], HA [auth A], HC [auth B], IA [auth A], IC [auth B], JA [auth A], JC [auth B], KA [auth A], KC [auth B], LA [auth A], LC [auth B], MA [auth A], MC [auth B], NA [auth A], NC [auth B], OA [auth A], OC [auth B], PA [auth A], PC [auth B], QA [auth A], QC [auth B], RA [auth A], RC [auth B], SA [auth A], SC [auth B], X [auth A], Y [auth A], Z [auth A]	4-(2-hydroxyethyl)benzene-1,2-diol C₈ H₁₀ O₃ JUUBCHWRXWPFFH-UHFFFAOYSA-N		Interactions Focus chain AA [auth A] Focus chain BA [auth A] Focus chain CA [auth A] Focus chain CC [auth B] Focus chain DA [auth A] Focus chain DC [auth B] Focus chain EA [auth A] Focus chain EC [auth B] Focus chain FA [auth A] Focus chain FC [auth B] Focus chain GA [auth A] Focus chain GC [auth B] Focus chain HA [auth A] Focus chain HC [auth B] Focus chain IA [auth A] Focus chain IC [auth B] Focus chain JA [auth A] Focus chain JC [auth B] Focus chain KA [auth A] Focus chain KC [auth B] Focus chain LA [auth A] Focus chain LC [auth B] Focus chain MA [auth A] Focus chain MC [auth B] Focus chain NA [auth A] Focus chain NC [auth B] Focus chain OA [auth A] Focus chain OC [auth B] Focus chain PA [auth A] Focus chain PC [auth B] Focus chain QA [auth A] Focus chain QC [auth B] Focus chain RA [auth A] Focus chain RC [auth B] Focus chain SA [auth A] Focus chain SC [auth B] Focus chain X [auth A] Focus chain Y [auth A] Focus chain Z [auth A] Interactions & Density Focus chain AA [auth A] Focus chain BA [auth A] Focus chain CA [auth A] Focus chain CC [auth B] Focus chain DA [auth A] Focus chain DC [auth B] Focus chain EA [auth A] Focus chain EC [auth B] Focus chain FA [auth A] Focus chain FC [auth B] Focus chain GA [auth A] Focus chain GC [auth B] Focus chain HA [auth A] Focus chain HC [auth B] Focus chain IA [auth A] Focus chain IC [auth B] Focus chain JA [auth A] Focus chain JC [auth B] Focus chain KA [auth A] Focus chain KC [auth B] Focus chain LA [auth A] Focus chain LC [auth B] Focus chain MA [auth A] Focus chain MC [auth B] Focus chain NA [auth A] Focus chain NC [auth B] Focus chain OA [auth A] Focus chain OC [auth B] Focus chain PA [auth A] Focus chain PC [auth B] Focus chain QA [auth A] Focus chain QC [auth B] Focus chain RA [auth A] Focus chain RC [auth B] Focus chain SA [auth A] Focus chain SC [auth B] Focus chain X [auth A] Focus chain Y [auth A] Focus chain Z [auth A]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain AB [auth A] SDF format, chain AD [auth B] SDF format, chain BB [auth A] SDF format, chain CB [auth A] SDF format, chain CD [auth B] SDF format, chain DB [auth A] SDF format, chain DD [auth B] SDF format, chain EB [auth A] SDF format, chain ED [auth B] SDF format, chain FB [auth A] SDF format, chain FD [auth B] SDF format, chain GB [auth A] SDF format, chain GD [auth B] SDF format, chain HB [auth A] SDF format, chain HD [auth B] SDF format, chain IB [auth A] SDF format, chain ID [auth B] SDF format, chain JB [auth A] SDF format, chain JD [auth B] SDF format, chain KB [auth A] SDF format, chain KD [auth B] SDF format, chain LB [auth A] SDF format, chain LD [auth B] SDF format, chain MB [auth A] SDF format, chain NB [auth A] SDF format, chain OB [auth A] SDF format, chain PB [auth A] SDF format, chain TA [auth A] SDF format, chain UA [auth A] SDF format, chain UC [auth B] SDF format, chain VA [auth A] SDF format, chain VC [auth B] SDF format, chain WA [auth A] SDF format, chain XA [auth A] SDF format, chain XC [auth B] SDF format, chain YA [auth A] SDF format, chain YC [auth B] SDF format, chain ZA [auth A] SDF format, chain ZC [auth B] SDF format, chain WC [auth B] SDF format, chain TC [auth B] SDF format, chain BD [auth B] MOL2 format, chain AB [auth A] MOL2 format, chain AD [auth B] MOL2 format, chain BB [auth A] MOL2 format, chain CB [auth A] MOL2 format, chain CD [auth B] MOL2 format, chain DB [auth A] MOL2 format, chain DD [auth B] MOL2 format, chain EB [auth A] MOL2 format, chain ED [auth B] MOL2 format, chain FB [auth A] MOL2 format, chain FD [auth B] MOL2 format, chain GB [auth A] MOL2 format, chain GD [auth B] MOL2 format, chain HB [auth A] MOL2 format, chain HD [auth B] MOL2 format, chain IB [auth A] MOL2 format, chain ID [auth B] MOL2 format, chain JB [auth A] MOL2 format, chain JD [auth B] MOL2 format, chain KB [auth A] MOL2 format, chain KD [auth B] MOL2 format, chain LB [auth A] MOL2 format, chain LD [auth B] MOL2 format, chain MB [auth A] MOL2 format, chain NB [auth A] MOL2 format, chain OB [auth A] MOL2 format, chain PB [auth A] MOL2 format, chain TA [auth A] MOL2 format, chain UA [auth A] MOL2 format, chain UC [auth B] MOL2 format, chain VA [auth A] MOL2 format, chain VC [auth B] MOL2 format, chain WA [auth A] MOL2 format, chain XA [auth A] MOL2 format, chain XC [auth B] MOL2 format, chain YA [auth A] MOL2 format, chain YC [auth B] MOL2 format, chain ZA [auth A] MOL2 format, chain ZC [auth B] MOL2 format, chain WC [auth B] MOL2 format, chain TC [auth B] MOL2 format, chain BD [auth B] mmCIF format, chain AB [auth A] mmCIF format, chain AD [auth B] mmCIF format, chain BB [auth A] mmCIF format, chain CB [auth A] mmCIF format, chain CD [auth B] mmCIF format, chain DB [auth A] mmCIF format, chain DD [auth B] mmCIF format, chain EB [auth A] mmCIF format, chain ED [auth B] mmCIF format, chain FB [auth A] mmCIF format, chain FD [auth B] mmCIF format, chain GB [auth A] mmCIF format, chain GD [auth B] mmCIF format, chain HB [auth A] mmCIF format, chain HD [auth B] mmCIF format, chain IB [auth A] mmCIF format, chain ID [auth B] mmCIF format, chain JB [auth A] mmCIF format, chain JD [auth B] mmCIF format, chain KB [auth A] mmCIF format, chain KD [auth B] mmCIF format, chain LB [auth A] mmCIF format, chain LD [auth B] mmCIF format, chain MB [auth A] mmCIF format, chain NB [auth A] mmCIF format, chain OB [auth A] mmCIF format, chain PB [auth A] mmCIF format, chain TA [auth A] mmCIF format, chain UA [auth A] mmCIF format, chain UC [auth B] mmCIF format, chain VA [auth A] mmCIF format, chain VC [auth B] mmCIF format, chain WA [auth A] mmCIF format, chain XA [auth A] mmCIF format, chain XC [auth B] mmCIF format, chain YA [auth A] mmCIF format, chain YC [auth B] mmCIF format, chain ZA [auth A] mmCIF format, chain ZC [auth B] mmCIF format, chain WC [auth B] mmCIF format, chain TC [auth B] mmCIF format, chain BD [auth B]	AB [auth A] AD [auth B] BB [auth A] BD [auth B] CB [auth A] AB [auth A], AD [auth B], BB [auth A], BD [auth B], CB [auth A], CD [auth B], DB [auth A], DD [auth B], EB [auth A], ED [auth B], FB [auth A], FD [auth B], GB [auth A], GD [auth B], HB [auth A], HD [auth B], IB [auth A], ID [auth B], JB [auth A], JD [auth B], KB [auth A], KD [auth B], LB [auth A], LD [auth B], MB [auth A], NB [auth A], OB [auth A], PB [auth A], TA [auth A], TC [auth B], UA [auth A], UC [auth B], VA [auth A], VC [auth B], WA [auth A], WC [auth B], XA [auth A], XC [auth B], YA [auth A], YC [auth B], ZA [auth A], ZC [auth B]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain AB [auth A] Focus chain AD [auth B] Focus chain BB [auth A] Focus chain BD [auth B] Focus chain CB [auth A] Focus chain CD [auth B] Focus chain DB [auth A] Focus chain DD [auth B] Focus chain EB [auth A] Focus chain ED [auth B] Focus chain FB [auth A] Focus chain FD [auth B] Focus chain GB [auth A] Focus chain GD [auth B] Focus chain HB [auth A] Focus chain HD [auth B] Focus chain IB [auth A] Focus chain ID [auth B] Focus chain JB [auth A] Focus chain JD [auth B] Focus chain KB [auth A] Focus chain KD [auth B] Focus chain LB [auth A] Focus chain LD [auth B] Focus chain MB [auth A] Focus chain NB [auth A] Focus chain OB [auth A] Focus chain PB [auth A] Focus chain TA [auth A] Focus chain TC [auth B] Focus chain UA [auth A] Focus chain UC [auth B] Focus chain VA [auth A] Focus chain VC [auth B] Focus chain WA [auth A] Focus chain WC [auth B] Focus chain XA [auth A] Focus chain XC [auth B] Focus chain YA [auth A] Focus chain YC [auth B] Focus chain ZA [auth A] Focus chain ZC [auth B] Interactions & Density Focus chain AB [auth A] Focus chain AD [auth B] Focus chain BB [auth A] Focus chain BD [auth B] Focus chain CB [auth A] Focus chain CD [auth B] Focus chain DB [auth A] Focus chain DD [auth B] Focus chain EB [auth A] Focus chain ED [auth B] Focus chain FB [auth A] Focus chain FD [auth B] Focus chain GB [auth A] Focus chain GD [auth B] Focus chain HB [auth A] Focus chain HD [auth B] Focus chain IB [auth A] Focus chain ID [auth B] Focus chain JB [auth A] Focus chain JD [auth B] Focus chain KB [auth A] Focus chain KD [auth B] Focus chain LB [auth A] Focus chain LD [auth B] Focus chain MB [auth A] Focus chain NB [auth A] Focus chain OB [auth A] Focus chain PB [auth A] Focus chain TA [auth A] Focus chain TC [auth B] Focus chain UA [auth A] Focus chain UC [auth B] Focus chain VA [auth A] Focus chain VC [auth B] Focus chain WA [auth A] Focus chain WC [auth B] Focus chain XA [auth A] Focus chain XC [auth B] Focus chain YA [auth A] Focus chain YC [auth B] Focus chain ZA [auth A] Focus chain ZC [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.189 (Depositor), 0.199 (DCC)
R-Value Work: 0.177 (Depositor), 0.187 (DCC)
R-Value Observed: 0.177 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.86	α = 90
b = 206.124	β = 90
c = 145.529	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2018-11-07

Deposition Author(s):

Ramirez-Escudero, M.

Sanz-Aparicio, J.

Revision History (Full details and data files)

Version 1.0: 2018-11-07
Type: Initial release
Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary
Version 2.1: 2024-01-17
Changes: Advisory, Data collection, Database references, Derived calculations, Refinement description, Structure summary
Version 2.2: 2024-10-16
Changes: Structure summary