5MTA

G-quadruplex formed within promoters of Plasmodium falciparum B var genes

PDB DOI: https://doi.org/10.2210/pdb5MTA/pdb
NAKB: 5MTA
BMRB: 34083

Classification: DNA
Organism(s): Plasmodium falciparum
Mutation(s): No

Deposited: 2017-01-09 Released: 2018-02-28
Deposition Author(s): Juribasic Kulcsar, M., Plavec, J.
Funding Organization(s): Slovenian Research Agency

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 1000
Conformers Submitted: 10
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Stabilizing interactions in long-loop G-quadruplex formed within promoters of Plasmodium falciparum B var genes

Juribasic Kulcsar, M., Gabelica, V., Plavec, J.

To be published.

Macromolecule Content

Total Structure Weight: 10.66 kDa
Atom Count: 709
Modelled Residue Count: 34
Deposited Residue Count: 34
Unique nucleic acid chains: 1

Macromolecules

Find similar nucleic acids by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Length	Organism	Image
UpsB-Q-1, DNA (34-MER)	A	34	Plasmodium falciparum
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 1000
Conformers Submitted: 10
Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2018-02-28

Deposition Author(s):

Juribasic Kulcsar, M.

Funding Organization	Location	Grant Number
Slovenian Research Agency	Slovenia	P1-0242
Slovenian Research Agency	Slovenia	J1-6733

Revision History (Full details and data files)

Version 1.0: 2018-02-28
Type: Initial release
Version 1.1: 2019-05-08
Changes: Data collection
Version 1.2: 2019-06-19
Changes: Data collection

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.