5MLD

Crystal Structure of RosB with bound intermediate AFP (8-demethyl-8-aminoriboflavin-5'-phosphate)

PDB DOI: https://doi.org/10.2210/pdb5MLD/pdb

Classification: ELECTRON TRANSPORT
Organism(s): Streptomyces davaonensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-12-06 Released: 2017-12-20
Deposition Author(s): Konjik, V., Bruenle, S., Demmer, U., Vanselow, A., Sandhoff, R., Mack, M., Ermler, U.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.213
R-Value Work: 0.174
R-Value Observed: 0.176

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of RosB gives insights into the reaction mechanism of this first known member of a new family of flavodoxin-like enzymes

Konjik, V., Bruenle, S., Demmer, U., Vanselow, A., Sandhoff, R., Mack, M., Ermler, U.

To be published.

Macromolecule Content

Total Structure Weight: 234.85 kDa
Atom Count: 18,138
Modelled Residue Count: 2,016
Deposited Residue Count: 2,056
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
BRAMP domain protein	A, B, C, D, E A, B, C, D, E, F, G, H	257	Streptomyces davaonensis	Mutation(s): 0 Gene Names: BN159_7989 EC: 2.6.1.114
UniProt
Find proteins for K4REZ6 (Streptomyces davaonensis (strain DSM 101723 / JCM 4913 / KCC S-0913 / 768)) Explore K4REZ6 Go to UniProtKB: K4REZ6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	K4REZ6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
8DP Query on 8DP Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain J [auth B] SDF format, chain K [auth C] SDF format, chain L [auth D] SDF format, chain M [auth E] SDF format, chain N [auth F] SDF format, chain O [auth G] SDF format, chain P [auth H] MOL2 format, chain I [auth A] MOL2 format, chain J [auth B] MOL2 format, chain K [auth C] MOL2 format, chain L [auth D] MOL2 format, chain M [auth E] MOL2 format, chain N [auth F] MOL2 format, chain O [auth G] MOL2 format, chain P [auth H] mmCIF format, chain I [auth A] mmCIF format, chain J [auth B] mmCIF format, chain K [auth C] mmCIF format, chain L [auth D] mmCIF format, chain M [auth E] mmCIF format, chain N [auth F] mmCIF format, chain O [auth G] mmCIF format, chain P [auth H]	I [auth A] J [auth B] K [auth C] L [auth D] M [auth E] I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	8-demethyl-8-aminoriboflavin-5'-phosphate C₁₆ H₁₉ N₅ O₉ P SDTLZDHOYFRAPQ-WCQYABFASA-O		Interactions Focus chain I [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth D] Focus chain M [auth E] Focus chain N [auth F] Focus chain O [auth G] Focus chain P [auth H] Interactions & Density Focus chain I [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth D] Focus chain M [auth E] Focus chain N [auth F] Focus chain O [auth G] Focus chain P [auth H]