5M0K

CRYSTAL STRUCTURE of endo-1,4-beta-xylanase from Cellulomonas flavigena

PDB DOI: https://doi.org/10.2210/pdb5M0K/pdb

Classification: HYDROLASE
Organism(s): Cellulomonas flavigena
Expression System: Komagataella phaffii GS115
Mutation(s): No

Deposited: 2016-10-05 Released: 2017-11-29
Deposition Author(s): Gabdulkhakov, A., Tishchenko, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.59 Å
R-Value Free: 0.260
R-Value Work: 0.210
R-Value Observed: 0.213

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

CRYSTAL STRUCTURE of endo-1,4-beta-xylanase from Cellulomonas flavigena

Gabdulkhakov, A., Tishchenko, S.

To be published.

Macromolecule Content

Total Structure Weight: 77.53 kDa
Atom Count: 4,645
Modelled Residue Count: 598
Deposited Residue Count: 720
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-xylanase	A, B	360	Cellulomonas flavigena	Mutation(s): 0 Gene Names: Cfla_0376 EC: 3.2.1.8
UniProt
Find proteins for D5UH90 (Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / BCRC 11376 / JCM 18109 / NBRC 3775 / NCIMB 8073 / NRS 134)) Explore D5UH90 Go to UniProtKB: D5UH90
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	D5UH90
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.59 Å
R-Value Free: 0.260
R-Value Work: 0.210
R-Value Observed: 0.213
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 141.151	α = 90
b = 122.879	β = 92.52
c = 40.904	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-11-29

Deposition Author(s):

Gabdulkhakov, A.

Revision History (Full details and data files)

Version 1.0: 2017-11-29
Type: Initial release
Version 1.1: 2019-10-16
Changes: Data collection
Version 1.2: 2024-01-17
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.