5LNF

Solution NMR structure of farnesylated PEX19, C-terminal domain


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 20 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Allosteric modulation of peroxisomal membrane protein recognition by farnesylation of the peroxisomal import receptor PEX19.

Emmanouilidis, L.Schutz, U.Tripsianes, K.Madl, T.Radke, J.Rucktaschel, R.Wilmanns, M.Schliebs, W.Erdmann, R.Sattler, M.

(2017) Nat Commun 8: 14635-14635

  • DOI: https://doi.org/10.1038/ncomms14635
  • Primary Citation of Related Structures:  
    5LNF

  • PubMed Abstract: 

    The transport of peroxisomal membrane proteins (PMPs) requires the soluble PEX19 protein as chaperone and import receptor. Recognition of cargo PMPs by the C-terminal domain (CTD) of PEX19 is required for peroxisome biogenesis in vivo. Farnesylation at a C-terminal CaaX motif in PEX19 enhances the PMP interaction, but the underlying molecular mechanisms are unknown. Here, we report the NMR-derived structure of the farnesylated human PEX19 CTD, which reveals that the farnesyl moiety is buried in an internal hydrophobic cavity. This induces substantial conformational changes that allosterically reshape the PEX19 surface to form two hydrophobic pockets for the recognition of conserved aromatic/aliphatic side chains in PMPs. Mutations of PEX19 residues that either mediate farnesyl contacts or are directly involved in PMP recognition abolish cargo binding and cannot complement a ΔPEX19 phenotype in human Zellweger patient fibroblasts. Our results demonstrate an allosteric mechanism for the modulation of protein function by farnesylation.


  • Organizational Affiliation

    Institute of Structural Biology, Helmholtz Zentrum München, Ingolstädter Landstr. 1, Neuherberg 85764, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Peroxisomal biogenesis factor 19139Homo sapiensMutation(s): 0 
Gene Names: PEX19HK33PXFOK/SW-cl.22
UniProt & NIH Common Fund Data Resources
Find proteins for P40855 (Homo sapiens)
Explore P40855 
Go to UniProtKB:  P40855
PHAROS:  P40855
GTEx:  ENSG00000162735 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40855
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
FAR
Query on FAR

Download Ideal Coordinates CCD File 
B [auth A]FARNESYL
C15 H26
JXBSHSBNOVLGHF-BUJBXKITSA-N
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 20 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-03-15
    Type: Initial release
  • Version 1.1: 2017-03-22
    Changes: Database references
  • Version 1.2: 2019-09-11
    Changes: Data collection
  • Version 1.3: 2024-11-13
    Changes: Data collection, Database references, Structure summary