Structural basis of HMOs interaction with the emerging GII.17 norovirus Kawasaki308
Singh, B.K., Morozov, V., Hansman, G.S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Major capsid protein | 308 | Norovirus GII | Mutation(s): 0  Gene Names: VP1 | ||
UniProt | |||||
Find proteins for A0A0E4B1P1 (Norovirus Hu/GII/JP/2015/GII.P17_GII.17/Kawasaki308) Explore A0A0E4B1P1  Go to UniProtKB:  A0A0E4B1P1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0E4B1P1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | E [auth A] F [auth A] G [auth A] H [auth A] J [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MG Query on MG | I [auth A], M [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 75.14 | α = 90 |
b = 86.71 | β = 90 |
c = 96.17 | γ = 90 |
Software Name | Purpose |
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XSCALE | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |