5KWM | pdb_00005kwm

S. erythraea trypsin long construct apoenzyme

PDB DOI: https://doi.org/10.2210/pdb5KWM/pdb

Classification: HYDROLASE
Organism(s): Saccharopolyspora erythraea
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-07-18 Released: 2017-10-18
Deposition Author(s): Blankenship, E., Lodowski, D.T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 0.78 Å
R-Value Free:
0.137 (Depositor), 0.139 (DCC)
R-Value Work:
0.129 (Depositor), 0.130 (DCC)
R-Value Observed:
0.129 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

S. erythraea trypsin long construct

Blankenship, E., Lodowski, D.T.

To be published.

Macromolecule Content

Total Structure Weight: 23.66 kDa
Atom Count: 2,300
Modeled Residue Count: 222
Deposited Residue Count: 230
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Trypsin	A	230	Saccharopolyspora erythraea	Mutation(s): 0
UniProt
Find proteins for Q54137 (Saccharopolyspora erythraea) Explore Q54137 Go to UniProtKB: Q54137
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q54137
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 0.78 Å
R-Value Free: 0.137 (Depositor), 0.139 (DCC)
R-Value Work: 0.129 (Depositor), 0.130 (DCC)
R-Value Observed: 0.129 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.851	α = 90
b = 61.122	β = 90
c = 74.151	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-10-18

Deposition Author(s):

Blankenship, E.

Revision History (Full details and data files)

Version 1.0: 2017-10-18
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description
Version 1.2: 2024-10-09
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.