5JPZ | pdb_00005jpz

Crystal structure of HAT domain of human Squamous Cell Carcinoma Antigen Recognized By T Cells 3, SART3 (TIP110)

• PDB DOI: https://doi.org/10.2210/pdb5JPZ/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-05-04 Released: 2016-05-11 
• Deposition Author(s): Grazette, A., Harper, S., Emsley, J., Layfield, R., Dreveny, I.
• Funding Organization(s): Biotechnology and Biological Sciences Research Council

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.04 Å
• R-Value Free: 
  0.280 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.236 (Depositor), 0.230 (DCC) 
• R-Value Observed: 
  0.238 (Depositor) 

Literature

unpublished

Grazette, A., Harper, S., Emsley, J., Oldham, N.J., Layfield, R., Dreveny, I.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 120.2 kDa 
• Atom Count: 8,115 
• Modeled Residue Count: 968 
• Deposited Residue Count: 1,018 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Squamous cell carcinoma antigen recognized by T-cells 3	A, B	509	Homo sapiens	Mutation(s): 0  Gene Names: SART3, KIAA0156, TIP110
UniProt & NIH Common Fund Data Resources
Find proteins for Q15020 (Homo sapiens) Explore Q15020  Go to UniProtKB:  Q15020
PHAROS:  Q15020 GTEx:  ENSG00000075856

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.04 Å
• R-Value Free:  0.280 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.236 (Depositor), 0.230 (DCC) 
• R-Value Observed: 0.238 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 105.568	α = 90
b = 118.351	β = 90
c = 133.294	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
PHENIX	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
Coot	model building

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2016-05-11 
Deposition Author(s): Grazette, A., Harper, S., Emsley, J., Layfield, R., Dreveny, I.

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Funding Organization	Location	Grant Number
Biotechnology and Biological Sciences Research Council	United Kingdom	BB/H012656/1

Revision History  

• Version 1.0: 2016-05-11
  Type: Initial release
  
• Version 1.1: 2017-08-30
  Changes: Author supporting evidence
• Version 1.2: 2019-02-20
  Changes: Advisory, Data collection, Derived calculations
• Version 1.3: 2024-05-08
  Changes: Data collection, Database references, Refinement description