5JN0 | pdb_00005jn0

CRK-II SH2 domain

• PDB DOI: https://doi.org/10.2210/pdb5JN0/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-04-29 Released: 2017-08-09 
• Deposition Author(s): Cho, J.-H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free: 
  0.210 (Depositor), 0.206 (DCC) 
• R-Value Work: 
  0.170 (Depositor), 0.164 (DCC) 
• R-Value Observed: 
  0.171 (Depositor) 

Literature

CRK-II SH2 domain

Cho, J.-H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 11.4 kDa 
• Atom Count: 981 
• Modeled Residue Count: 96 
• Deposited Residue Count: 99 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CRK-II SH2 domain	A	99	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for Q64010 (Mus musculus) Explore Q64010  Go to UniProtKB:  Q64010

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	B [auth A], C [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free:  0.210 (Depositor), 0.206 (DCC) 
• R-Value Work:  0.170 (Depositor), 0.164 (DCC) 
• R-Value Observed: 0.171 (Depositor) 

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.082	α = 90
b = 86.082	β = 90
c = 33.847	γ = 120

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-08-09 
Deposition Author(s): Cho, J.-H.

Revision History  

• Version 1.0: 2017-08-09
  Type: Initial release
  
• Version 1.1: 2024-03-06
  Changes: Data collection, Database references