5JHE | pdb_00005jhe

The Crystal Structure of the Saccharomyces cerevisiae Co-Chaperone Cpr7

  • Classification: CHAPERONE
  • Organism(s): Saccharomyces cerevisiae S288C
  • Expression System: Escherichia coli BL21(DE3)
  • Mutation(s): No 

  • Deposited: 2016-04-20 Released: 2017-04-26 
  • Deposition Author(s): Yu, Q., Xu, L.
  • Funding Organization(s): Chinese National Natural Science Foundation, Ministry of Science and Technology (China), Scientific Research Grant of Hefei Science Center of CAS

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 
    0.211 (Depositor), 0.214 (DCC) 
  • R-Value Work: 
    0.185 (Depositor), 0.192 (DCC) 
  • R-Value Observed: 
    0.186 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history. 

Literature

The Crystal Structure of the Saccharomyces cerevisiae Co-Chaperone Cpr7

Yu, Q., Xu, L.

To be published.

Macromolecule Content 

  • Total Structure Weight: 45.74 kDa 
  • Atom Count: 3,431 
  • Modeled Residue Count: 388 
  • Deposited Residue Count: 397 
  • Unique protein chains: 1

Macromolecules

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|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Peptidyl-prolyl cis-trans isomerase CYP7397Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: CPR7, YJR032W, J1585
EC: 5.2.1.8
UniProt
Find proteins for P47103 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P47103 
Go to UniProtKB:  P47103
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP47103
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free:  0.211 (Depositor), 0.214 (DCC) 
  • R-Value Work:  0.185 (Depositor), 0.192 (DCC) 
  • R-Value Observed: 0.186 (Depositor) 
Space Group: P 42
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 75.332α = 90
b = 75.332β = 90
c = 100.794γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data

  • Released Date: 2017-04-26 
    • Deposition Author(s): Yu, Q., Xu, L.
Funding OrganizationLocationGrant Number
Chinese National Natural Science FoundationChina31130018
Ministry of Science and Technology (China)China2012CB917200
Chinese National Natural Science FoundationChina31370732
Scientific Research Grant of Hefei Science Center of CASChina2015SRG-HSC042

Revision History  (Full details and data files)

  • Version 1.0: 2017-04-26
    Type: Initial release
  • Version 1.1: 2017-10-18
    Changes: Author supporting evidence
  • Version 1.2: 2023-11-08
    Changes: Data collection, Database references, Refinement description