5J8T | pdb_00005j8t

NMR structure of Excalibur domain of CbpL

PDB DOI: https://doi.org/10.2210/pdb5J8T/pdb
BMRB: 30064

Classification: HYDROLASE
Organism(s): Streptococcus pneumoniae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-04-08 Released: 2017-05-10
Deposition Author(s): Pantoja-Uceda, D., Trevino, M.A., Bruix, M.
Funding Organization(s): Spanish Ministry of Economy and Competitiveness

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 5J8T

This is version 2.3 of the entry. See complete history.

Literature

Molecular Choline-bindind Protein L Involved in Pneumococcal Adhesion and Virulence through Exposed Excalibur domanin

Gutierrez-Fernandez, J., Alcorlo, M., Galan-Bartual, S., Pantoja-Uceda, D., Trevino, M.A., Bruix, M., Hammerschmidt, S., Hermoso, J.A.

To be published.

Macromolecule Content

Total Structure Weight: 5.19 kDa
Atom Count: 362
Modeled Residue Count: 47
Deposited Residue Count: 47
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Choline binding protein	A	47	Streptococcus pneumoniae	Mutation(s): 0 Gene Names: lytB_2, ERS020147_00413 EC: 3.2.1.96

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA Query on CA Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2017-05-10

Deposition Author(s):

Pantoja-Uceda, D.

Funding Organization	Location	Grant Number
Spanish Ministry of Economy and Competitiveness	Spain	CTQ2014-52633

Revision History (Full details and data files)

Version 1.0: 2017-05-10
Type: Initial release
Version 2.0: 2017-09-06
Changes: Atomic model, Author supporting evidence
Version 2.1: 2019-05-08
Changes: Data collection
Version 2.2: 2019-10-23
Changes: Data collection, Derived calculations, Experimental preparation
Version 2.3: 2024-11-20
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.