5J5K | pdb_00005j5k

CRYSTAL STRUCTURE OF AFMP4P IN COMPLEX WITH PALMITIC ACID

• PDB DOI: https://doi.org/10.2210/pdb5J5K/pdb

• Classification: LIPID BINDING PROTEIN
• Organism(s): Aspergillus fumigatus Af293
• Expression System: Komagataella pastoris DSMZ 70382
• Mutation(s): No 


• Deposited: 2016-04-03 Released: 2017-04-05 
• Deposition Author(s): Zhang, H., Hao, Q.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free: 
  0.184 (Depositor), 0.222 (DCC) 
• R-Value Work: 
  0.149 (Depositor), 0.191 (DCC) 
• R-Value Observed: 
  0.151 (Depositor) 

Starting Model: experimental

Literature

A Novel Class Of Virulence Factors In Penicillium Marneffei And Aspergillus Fumigatus Enhances Intracellular Survival In Monocytes By Arachidonic Acid Binding

Zhang, H., Hao, Q., Lam, W.H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 17.35 kDa 
• Atom Count: 1,259 
• Modeled Residue Count: 151 
• Deposited Residue Count: 164 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A	164	Aspergillus fumigatus Af293	Mutation(s): 0  Gene Names: AFUA_2G17630
UniProt
Find proteins for Q4WZA5 (Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)) Explore Q4WZA5  Go to UniProtKB:  Q4WZA5
Glycosylation
Glycosylation Sites: 1

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PLM	C [auth A]	PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N
MAN	B [auth A]	alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free:  0.184 (Depositor), 0.222 (DCC) 
• R-Value Work:  0.149 (Depositor), 0.191 (DCC) 
• R-Value Observed: 0.151 (Depositor) 

Space Group: I 4 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 124.836	α = 90
b = 124.836	β = 90
c = 124.836	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-04-05 
Deposition Author(s): Zhang, H., Hao, Q.

Revision History  

• Version 1.0: 2017-04-05
  Type: Initial release
  
• Version 1.1: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Structure summary
• Version 1.2: 2023-10-11
  Changes: Data collection, Database references, Structure summary
• Version 1.3: 2023-11-08
  Changes: Refinement description
• Version 1.4: 2024-10-09
  Changes: Structure summary