5J11

Structure of human TSLP in complex with TSLPR and IL-7Ralpha


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.193 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.5 of the entry. See complete history


Literature

Structure and antagonism of the receptor complex mediated by human TSLP in allergy and asthma.

Verstraete, K.Peelman, F.Braun, H.Lopez, J.Van Rompaey, D.Dansercoer, A.Vandenberghe, I.Pauwels, K.Tavernier, J.Lambrecht, B.N.Hammad, H.De Winter, H.Beyaert, R.Lippens, G.Savvides, S.N.

(2017) Nat Commun 8: 14937-14937

  • DOI: https://doi.org/10.1038/ncomms14937
  • Primary Citation of Related Structures:  
    5J11, 5J13

  • PubMed Abstract: 

    The pro-inflammatory cytokine thymic stromal lymphopoietin (TSLP) is pivotal to the pathophysiology of widespread allergic diseases mediated by type 2 helper T cell (Th2) responses, including asthma and atopic dermatitis. The emergence of human TSLP as a clinical target against asthma calls for maximally harnessing its therapeutic potential via structural and mechanistic considerations. Here we employ an integrative experimental approach focusing on productive and antagonized TSLP complexes and free cytokine. We reveal how cognate receptor TSLPR allosterically activates TSLP to potentiate the recruitment of the shared interleukin 7 receptor α-chain (IL-7Rα) by leveraging the flexibility, conformational heterogeneity and electrostatics of the cytokine. We further show that the monoclonal antibody Tezepelumab partly exploits these principles to neutralize TSLP activity. Finally, we introduce a fusion protein comprising a tandem of the TSLPR and IL-7Rα extracellular domains, which harnesses the mechanistic intricacies of the TSLP-driven receptor complex to manifest high antagonistic potency.


  • Organizational Affiliation

    VIB-UGent Center for Inflammation Research, Zwijnaarde, Ghent 9052, Belgium.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thymic stromal lymphopoietin147Homo sapiensMutation(s): 0 
Gene Names: TSLP
UniProt & NIH Common Fund Data Resources
Find proteins for Q969D9 (Homo sapiens)
Explore Q969D9 
Go to UniProtKB:  Q969D9
PHAROS:  Q969D9
GTEx:  ENSG00000145777 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ969D9
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Interleukin-7 receptor subunit alpha240Homo sapiensMutation(s): 0 
Gene Names: IL7R
UniProt & NIH Common Fund Data Resources
Find proteins for P16871 (Homo sapiens)
Explore P16871 
Go to UniProtKB:  P16871
PHAROS:  P16871
GTEx:  ENSG00000168685 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16871
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cytokine receptor-like factor 2230Homo sapiensMutation(s): 0 
Gene Names: CRLF2CRL2ILXRTSLPR
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HC73 (Homo sapiens)
Explore Q9HC73 
Go to UniProtKB:  Q9HC73
PHAROS:  Q9HC73
GTEx:  ENSG00000205755 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9HC73
Glycosylation
Glycosylation Sites: 2Go to GlyGen: Q9HC73-1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.193 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 135.783α = 90
b = 66.644β = 109.2
c = 91.971γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
PHASERphasing
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 1.1: 2017-04-19
    Changes: Database references
  • Version 1.2: 2018-02-28
    Changes: Source and taxonomy
  • Version 1.3: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary
  • Version 1.4: 2024-01-10
    Changes: Data collection, Database references, Refinement description, Structure summary
  • Version 1.5: 2024-11-20
    Changes: Structure summary