5IX5 | pdb_00005ix5

NMR structure of antibacterial factor-2

PDB DOI: https://doi.org/10.2210/pdb5IX5/pdb
BMRB: 30039

Classification: ANTIBIOTIC
Organism(s): Caenorhabditis elegans
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2016-03-23 Released: 2017-03-29
Deposition Author(s): Masakatsu, K., Umetsu, Y., Rumi, F., Kikukawa, T., Ohki, S., Mizuguchi, M., Demura, M., Aizawa, T.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 5IX5

This is version 1.2 of the entry. See complete history.

Literature

NMR structure of ABF-2 (antibacterial factor-2) from C. elegans and the interaction with membrane mimetic systems

Rumi, F., Kamiya, M., Umetsu, Y., Kikukawa, T., Demura, M., Aizawa, T.

To be published.

Macromolecule Content

Total Structure Weight: 7.14 kDa
Atom Count: 487
Modeled Residue Count: 68
Deposited Residue Count: 68
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Antibacterial factor-related peptide 2	A	68	Caenorhabditis elegans	Mutation(s): 0 Gene Names: abf-2, C50F2.10 Membrane Entity: Yes
UniProt
Find proteins for G5EC68 (Caenorhabditis elegans) Explore G5EC68 Go to UniProtKB: G5EC68
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G5EC68
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-03-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-03-29
Type: Initial release
Version 1.1: 2023-06-14
Changes: Data collection, Database references, Other
Version 1.2: 2024-11-06
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.