5IHW | pdb_00005ihw

The crystal structure of SdrE from staphylococcus aureus

• PDB DOI: https://doi.org/10.2210/pdb5IHW/pdb

• Classification: MEMBRANE PROTEIN
• Organism(s): Staphylococcus aureus subsp. aureus MSSA476
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-02-29 Released: 2017-03-22 
• Deposition Author(s): Zhang, S., Wei, J., Wu, S., Zhang, X., Luo, M., Wang, D.
• Funding Organization(s): National Natural Science Foundation of China, Chongqing Natural Science Foundation

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.25 Å
• R-Value Free: 
  0.176 (Depositor), 0.184 (DCC) 
• R-Value Work: 
  0.143 (Depositor), 0.153 (DCC) 
• R-Value Observed: 
  0.144 (Depositor) 

Starting Model: experimental

Literature

The crystal structure of SdrE from staphylococcus aureus

Zhang, S., Wei, J., Wu, S., Zhang, X., Luo, M., Wang, D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 35.19 kDa 
• Atom Count: 2,807 
• Modeled Residue Count: 314 
• Deposited Residue Count: 314 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine-aspartate repeat-containing protein E	A	314	Staphylococcus aureus subsp. aureus MSSA476	Mutation(s): 0  Gene Names: sdrE, SAS0521
UniProt
Find proteins for Q6GBS4 (Staphylococcus aureus (strain MSSA476)) Explore Q6GBS4  Go to UniProtKB:  Q6GBS4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.25 Å
• R-Value Free:  0.176 (Depositor), 0.184 (DCC) 
• R-Value Work:  0.143 (Depositor), 0.153 (DCC) 
• R-Value Observed: 0.144 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.26	α = 95.59
b = 41.56	β = 97.55
c = 51.14	γ = 99.55

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
iMOSFLM	data reduction
PHENIX	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2017-03-22 
Deposition Author(s): Zhang, S., Wei, J., Wu, S., Zhang, X., Luo, M., Wang, D.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	81301395
Chongqing Natural Science Foundation	China	cstc2015jcyjA10003

Revision History  

• Version 1.0: 2017-03-22
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description