5HZ9 | pdb_00005hz9

human FABP3 in complex with 6-Chloro-2-methyl-4-phenyl-quinoline-3-carboxylic acid

PDB DOI: https://doi.org/10.2210/pdb5HZ9/pdb

Classification: LIPID BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2016-02-02 Released: 2016-12-14
Deposition Author(s): Ehler, A., Rudolph, M.G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.239 (Depositor), 0.205 (DCC)
R-Value Work:
0.197 (Depositor)
R-Value Observed:
0.200 (Depositor)

Starting Model: other
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Design and synthesis of selective, dual fatty acid binding protein 4 and 5 inhibitors.

Kuhne, H., Obst-Sander, U., Kuhn, B., Conte, A., Ceccarelli, S.M., Neidhart, W., Rudolph, M.G., Ottaviani, G., Gasser, R., So, S.S., Li, S., Zhang, X., Gao, L., Myers, M.

(2016) Bioorg Med Chem Lett 26: 5092-5097

PubMed: 27658368 Search on PubMed
DOI: https://doi.org/10.1016/j.bmcl.2016.08.071
Primary Citation Related Structures:
5HZ5, 5HZ6, 5HZ8, 5HZ9

PubMed Abstract:
Dual inhibition of fatty acid binding proteins 4 and 5 (FABP4 and FABP5) is expected to provide beneficial effects on a number of metabolic parameters such as insulin sensitivity and blood glucose levels and should protect against atherosclerosis. Starting from a FABP4 selective focused screening hit, biostructure information was used to modulate the selectivity profile in the desired way and to design potent dual FABP4/5 inhibitors with good selectivity against FABP3. With very good pharmacokinetic properties and no major safety alerts, compound 12 was identified as a suitable tool compound for further in vivo investigations.

Organizational Affiliation

Roche Pharmaceutical Research and Early Development, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, 4070 Basel, Switzerland. Electronic address: holger.kuehne@roche.com.

Macromolecule Content

Total Structure Weight: 127.79 kDa
Atom Count: 9,271
Modeled Residue Count: 1,079
Deposited Residue Count: 1,080
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fatty acid-binding protein, heart	A, B, C, D, E A, B, C, D, E, F, G, H	135	Homo sapiens	Mutation(s): 0 Gene Names: FABP3, FABP11, MDGI
UniProt & NIH Common Fund Data Resources
Find proteins for P05413 (Homo sapiens) Explore P05413 Go to UniProtKB: P05413
PHAROS: P05413 GTEx: ENSG00000121769
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P05413
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
5M8 Query on 5M8 Download:Ideal Coordinates CCD File SDF format, chain DA [auth E] SDF format, chain EA [auth E] SDF format, chain IA [auth F] SDF format, chain L [auth A] SDF format, chain M [auth A] SDF format, chain MA [auth G] SDF format, chain N [auth A] SDF format, chain NA [auth G] SDF format, chain OA [auth G] SDF format, chain PA [auth G] SDF format, chain R [auth B] SDF format, chain S [auth B] SDF format, chain SA [auth H] SDF format, chain TA [auth H] SDF format, chain V [auth C] SDF format, chain W [auth C] SDF format, chain Z [auth D] MOL2 format, chain DA [auth E] MOL2 format, chain EA [auth E] MOL2 format, chain IA [auth F] MOL2 format, chain L [auth A] MOL2 format, chain M [auth A] MOL2 format, chain MA [auth G] MOL2 format, chain N [auth A] MOL2 format, chain NA [auth G] MOL2 format, chain OA [auth G] MOL2 format, chain PA [auth G] MOL2 format, chain R [auth B] MOL2 format, chain S [auth B] MOL2 format, chain SA [auth H] MOL2 format, chain TA [auth H] MOL2 format, chain V [auth C] MOL2 format, chain W [auth C] MOL2 format, chain Z [auth D] mmCIF format, chain DA [auth E] mmCIF format, chain EA [auth E] mmCIF format, chain IA [auth F] mmCIF format, chain L [auth A] mmCIF format, chain M [auth A] mmCIF format, chain MA [auth G] mmCIF format, chain N [auth A] mmCIF format, chain NA [auth G] mmCIF format, chain OA [auth G] mmCIF format, chain PA [auth G] mmCIF format, chain R [auth B] mmCIF format, chain S [auth B] mmCIF format, chain SA [auth H] mmCIF format, chain TA [auth H] mmCIF format, chain V [auth C] mmCIF format, chain W [auth C] mmCIF format, chain Z [auth D]	DA [auth E] EA [auth E] IA [auth F] L [auth A] M [auth A] DA [auth E], EA [auth E], IA [auth F], L [auth A], M [auth A], MA [auth G], N [auth A], NA [auth G], OA [auth G], PA [auth G], R [auth B], S [auth B], SA [auth H], TA [auth H], V [auth C], W [auth C], Z [auth D]	6-chloranyl-2-methyl-4-phenyl-quinoline-3-carboxylic acid C₁₇ H₁₂ Cl N O₂ DTGFDMHLQGULMA-UHFFFAOYSA-N		Interactions Focus chain DA [auth E] Focus chain EA [auth E] Focus chain IA [auth F] Focus chain L [auth A] Focus chain M [auth A] Focus chain MA [auth G] Focus chain N [auth A] Focus chain NA [auth G] Focus chain OA [auth G] Focus chain PA [auth G] Focus chain R [auth B] Focus chain S [auth B] Focus chain SA [auth H] Focus chain TA [auth H] Focus chain V [auth C] Focus chain W [auth C] Focus chain Z [auth D] Interactions & Density Focus chain DA [auth E] Focus chain EA [auth E] Focus chain IA [auth F] Focus chain L [auth A] Focus chain M [auth A] Focus chain MA [auth G] Focus chain N [auth A] Focus chain NA [auth G] Focus chain OA [auth G] Focus chain PA [auth G] Focus chain R [auth B] Focus chain S [auth B] Focus chain SA [auth H] Focus chain TA [auth H] Focus chain V [auth C] Focus chain W [auth C] Focus chain Z [auth D]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain AA [auth E] SDF format, chain BA [auth E] SDF format, chain CA [auth E] SDF format, chain FA [auth F] SDF format, chain GA [auth F] SDF format, chain HA [auth F] SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain JA [auth G] SDF format, chain K [auth A] SDF format, chain KA [auth G] SDF format, chain O [auth B] SDF format, chain P [auth B] SDF format, chain Q [auth B] SDF format, chain QA [auth H] SDF format, chain T [auth C] SDF format, chain U [auth C] SDF format, chain X [auth D] SDF format, chain Y [auth D] MOL2 format, chain AA [auth E] MOL2 format, chain BA [auth E] MOL2 format, chain CA [auth E] MOL2 format, chain FA [auth F] MOL2 format, chain GA [auth F] MOL2 format, chain HA [auth F] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain JA [auth G] MOL2 format, chain K [auth A] MOL2 format, chain KA [auth G] MOL2 format, chain O [auth B] MOL2 format, chain P [auth B] MOL2 format, chain Q [auth B] MOL2 format, chain QA [auth H] MOL2 format, chain T [auth C] MOL2 format, chain U [auth C] MOL2 format, chain X [auth D] MOL2 format, chain Y [auth D] mmCIF format, chain AA [auth E] mmCIF format, chain BA [auth E] mmCIF format, chain CA [auth E] mmCIF format, chain FA [auth F] mmCIF format, chain GA [auth F] mmCIF format, chain HA [auth F] mmCIF format, chain I [auth A] mmCIF format, chain J [auth A] mmCIF format, chain JA [auth G] mmCIF format, chain K [auth A] mmCIF format, chain KA [auth G] mmCIF format, chain O [auth B] mmCIF format, chain P [auth B] mmCIF format, chain Q [auth B] mmCIF format, chain QA [auth H] mmCIF format, chain T [auth C] mmCIF format, chain U [auth C] mmCIF format, chain X [auth D] mmCIF format, chain Y [auth D]	AA [auth E] BA [auth E] CA [auth E] FA [auth F] GA [auth F] AA [auth E], BA [auth E], CA [auth E], FA [auth F], GA [auth F], HA [auth F], I [auth A], J [auth A], JA [auth G], K [auth A], KA [auth G], O [auth B], P [auth B], Q [auth B], QA [auth H], T [auth C], U [auth C], X [auth D], Y [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain AA [auth E] Focus chain BA [auth E] Focus chain CA [auth E] Focus chain FA [auth F] Focus chain GA [auth F] Focus chain HA [auth F] Focus chain I [auth A] Focus chain J [auth A] Focus chain JA [auth G] Focus chain K [auth A] Focus chain KA [auth G] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain QA [auth H] Focus chain T [auth C] Focus chain U [auth C] Focus chain X [auth D] Focus chain Y [auth D] Interactions & Density Focus chain AA [auth E] Focus chain BA [auth E] Focus chain CA [auth E] Focus chain FA [auth F] Focus chain GA [auth F] Focus chain HA [auth F] Focus chain I [auth A] Focus chain J [auth A] Focus chain JA [auth G] Focus chain K [auth A] Focus chain KA [auth G] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain QA [auth H] Focus chain T [auth C] Focus chain U [auth C] Focus chain X [auth D] Focus chain Y [auth D]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain LA [auth G] SDF format, chain RA [auth H] MOL2 format, chain LA [auth G] MOL2 format, chain RA [auth H] mmCIF format, chain LA [auth G] mmCIF format, chain RA [auth H]	LA [auth G], RA [auth H]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain LA [auth G] Focus chain RA [auth H] Interactions & Density Focus chain LA [auth G] Focus chain RA [auth H]