5HY6 | pdb_00005hy6

Spodoptera frugiperda eukaryotic translation initiation factor EIF5A

PDB DOI: https://doi.org/10.2210/pdb5HY6/pdb

Classification: TRANSLATION
Organism(s): Spodoptera frugiperda
Mutation(s): No

Deposited: 2016-02-01 Released: 2016-02-10
Deposition Author(s): Li, A.W.H., Oliver, A.W., Pearl, L.H.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.19 Å
R-Value Free:
0.260 (Depositor), 0.257 (DCC)
R-Value Work:
0.205 (Depositor), 0.216 (DCC)
R-Value Observed:
0.208 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Structure of Spodoptera frugiperda eukaryotic translation initiation factor EIF5A

Li, A.W.H., Oliver, A.W., Pearl, L.H.

To be published.

Macromolecule Content

Total Structure Weight: 17.55 kDa
Atom Count: 1,136
Modeled Residue Count: 141
Deposited Residue Count: 160
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Eukaryotic translation initiation factor 5A	A	160	Spodoptera frugiperda	Mutation(s): 0
UniProt
Find proteins for P62925 (Spodoptera frugiperda) Explore P62925 Go to UniProtKB: P62925
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62925
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.19 Å
R-Value Free: 0.260 (Depositor), 0.257 (DCC)
R-Value Work: 0.205 (Depositor), 0.216 (DCC)
R-Value Observed: 0.208 (Depositor)

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.78	α = 90
b = 56.78	β = 90
c = 87.421	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
iMOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2016-02-10

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	--

Revision History (Full details and data files)

Version 1.0: 2016-02-10
Type: Initial release
Version 1.1: 2019-10-16
Changes: Data collection
Version 1.2: 2024-01-10
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.