5HXK | pdb_00005hxk

Structure of TTHA1265

PDB DOI: https://doi.org/10.2210/pdb5HXK/pdb

Classification: HYDROLASE
Organism(s): Thermus thermophilus HB8
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-01-30 Released: 2017-02-01
Deposition Author(s): Wang, W.W., Ran, T.T., Xu, D.Q., Wang, M.T.
Funding Organization(s): National Natural Science Foundation of China, the Natural Science Foundation of Jiangsu Province

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.225 (Depositor), 0.226 (DCC)
R-Value Work:
0.187 (Depositor), 0.187 (DCC)
R-Value Observed:
0.189 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5HXK

This is version 1.3 of the entry. See complete history.

Literature

Structure of TTHA1264-1265 complex

Ran, T.T., Wang, W.W., Xu, D.Q., Wang, M.T.

To be published.

Macromolecule Content

Total Structure Weight: 138.28 kDa
Atom Count: 10,016
Modeled Residue Count: 1,208
Deposited Residue Count: 1,269
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc-dependent peptidase	A, B, C	423	Thermus thermophilus HB8	Mutation(s): 0 Gene Names: TTHA1265
UniProt
Find proteins for Q5SIU9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SIU9 Go to UniProtKB: Q5SIU9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5SIU9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.225 (Depositor), 0.226 (DCC)
R-Value Work: 0.187 (Depositor), 0.187 (DCC)
R-Value Observed: 0.189 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.544	α = 90
b = 116.544	β = 90
c = 165.726	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2017-02-01

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31170686
National Natural Science Foundation of China	China	31400055
National Natural Science Foundation of China	China	31100028
the Natural Science Foundation of Jiangsu Province	China	BK20140690

Revision History (Full details and data files)

Version 1.0: 2017-02-01
Type: Initial release
Version 1.1: 2017-10-04
Changes: Data collection
Version 1.2: 2017-10-18
Changes: Author supporting evidence
Version 1.3: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.