5HST | pdb_00005hst

Crystal structure of the dehydratase domain of MlnB from Bacillus amyloliquefaciens

PDB DOI: https://doi.org/10.2210/pdb5HST/pdb

Classification: LYASE
Organism(s): Bacillus amyloliquefaciens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2016-01-26 Released: 2017-02-01
Deposition Author(s): Jakob, R.P., Dilmi, J., Hauswirth, P., Herbst, D.A., Maier, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.228 (Depositor), 0.234 (DCC)
R-Value Work:
0.186 (Depositor), 0.190 (DCC)
R-Value Observed:
0.189 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal Structures of Dehydratase Domains from trans-AT Polyketide Biosynthetic Pathway

Jakob, R.P., Herbst, D.A., Muller, R., Maier, T.

To be published.

Macromolecule Content

Total Structure Weight: 67.95 kDa
Atom Count: 4,585
Modeled Residue Count: 535
Deposited Residue Count: 606
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Polyketide synthase type I	A, B	303	Bacillus amyloliquefaciens	Mutation(s): 0 Gene Names: pks2B
UniProt
Find proteins for Q1RS66 (Bacillus amyloliquefaciens) Explore Q1RS66 Go to UniProtKB: Q1RS66
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q1RS66
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.228 (Depositor), 0.234 (DCC)
R-Value Work: 0.186 (Depositor), 0.190 (DCC)
R-Value Observed: 0.189 (Depositor)

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.66	α = 90
b = 77.44	β = 90
c = 138.9	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-02-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-02-01
Type: Initial release
Version 1.1: 2024-01-10
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.