Crystal structure of a peptide deformylase from Burkholderia ambifaria
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Mayclin, S.J., Lorimer, D.D., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptide deformylase | 185 | Burkholderia ambifaria MC40-6 | Mutation(s): 0  Gene Names: def, BamMC406_1925 EC: 3.5.1.88 | ||
UniProt | |||||
Find proteins for B1YSH1 (Burkholderia ambifaria (strain MC40-6)) Explore B1YSH1  Go to UniProtKB:  B1YSH1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B1YSH1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | D [auth A] E [auth A] F [auth A] G [auth A] L [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
EDO Query on EDO | H [auth A], I [auth A], J [auth A], P [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
FE Query on FE | C [auth A], K [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 116.69 | α = 90 |
b = 121.35 | β = 90 |
c = 71.29 | γ = 90 |
Software Name | Purpose |
---|---|
XDS | data reduction |
XSCALE | data scaling |
PHENIX | refinement |
PHASER | phasing |
PDB_EXTRACT | data extraction |
Coot | model building |