5H9U | pdb_00005h9u

Crystal structure of a thermostable methionine adenosyltransferase

PDB DOI: https://doi.org/10.2210/pdb5H9U/pdb

Classification: TRANSFERASE
Organism(s): Thermus thermophilus HB27
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-12-29 Released: 2017-01-18
Deposition Author(s): Feng, Y., Wang, W.
Funding Organization(s): National Natural Science Foundation of China, Beijing Natural Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.67 Å
R-Value Free:
0.233 (Depositor), 0.233 (DCC)
R-Value Work:
0.173 (Depositor), 0.178 (DCC)
R-Value Observed:
0.176 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5H9U

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of a thermostable methionine adenosyltransferase

Feng, Y., Wang, W.

To be published.

Macromolecule Content

Total Structure Weight: 180.79 kDa
Atom Count: 12,140
Modeled Residue Count: 1,576
Deposited Residue Count: 1,652
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
S-adenosylmethionine synthase	A [auth C], B [auth A], C [auth B], D	413	Thermus thermophilus HB27	Mutation(s): 0 Gene Names: metK, TT_C1279 EC: 2.5.1.6
UniProt
Find proteins for Q72I53 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)) Explore Q72I53 Go to UniProtKB: Q72I53
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q72I53
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.67 Å
R-Value Free: 0.233 (Depositor), 0.233 (DCC)
R-Value Work: 0.173 (Depositor), 0.178 (DCC)
R-Value Observed: 0.176 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 230.024	α = 90
b = 77.053	β = 112.04
c = 96.792	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHASER	phasing
HKL-2000	data collection

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2017-01-18

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31400635
Beijing Natural Science Foundation	China	5154031

Revision History (Full details and data files)

Version 1.0: 2017-01-18
Type: Initial release
Version 1.1: 2017-10-18
Changes: Author supporting evidence
Version 1.2: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.