5GT6

Apo structure of Aldehyde Dehydrogenase from Bacillus cereus

• PDB DOI: https://doi.org/10.2210/pdb5GT6/pdb
• Entry: 5GT6 supersedes: 4PS9

• Classification: OXIDOREDUCTASE
• Organism(s): Bacillus cereus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-08-18 Released: 2017-09-06 
• Deposition Author(s): Ngo, H.P.T., Hong, S.H., Ho, T.H., Oh, D.K., Kang, L.W.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 
  0.251 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.182 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.185 (Depositor) 

Starting Model: experimental

Literature

crystal structures of aldehyde dehydrogenase from Bacillus cereus having atypical bidirectional oxidizing and reducing activities for all-trans-retinal

Ngo, H.P.T., Hong, S.H., Ho, T.H., Oh, D.K., Kang, L.W.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 223.43 kDa 
• Atom Count: 15,213 
• Modelled Residue Count: 1,958 
• Deposited Residue Count: 2,032 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Betaine-aldehyde dehydrogenase	A, B, C, D	508	Bacillus cereus	Mutation(s): 0  Gene Names: AT268_22120

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NA	E [auth A], F [auth B], G [auth C], H [auth D]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free:  0.251 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.182 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.185 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.527	α = 90
b = 93.284	β = 98.05
c = 145.472	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-09-06 
Deposition Author(s): Ngo, H.P.T., Hong, S.H., Ho, T.H., Oh, D.K., Kang, L.W.
• This entry supersedes: 4PS9

Revision History  

• Version 1.0: 2017-09-06
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Derived calculations, Refinement description