5FHC | pdb_00005fhc

Crystal Structure of Protective Human Antibodies 100 and 114 in Complex with Ebola Virus Fusion Glycoprotein (GP)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 6.70 Å
  • R-Value Free: 
    0.343 (Depositor), 0.331 (DCC) 
  • R-Value Work: 
    0.260 (Depositor), 0.275 (DCC) 
  • R-Value Observed: 
    0.265 (Depositor) 

wwPDB Validation 3D Report Full Report

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Literature

Structural and molecular basis for Ebola virus neutralization by protective human antibodies.

Misasi, J.Gilman, M.S.Kanekiyo, M.Gui, M.Cagigi, A.Mulangu, S.Corti, D.Ledgerwood, J.E.Lanzavecchia, A.Cunningham, J.Muyembe-Tamfun, J.J.Baxa, U.Graham, B.S.Xiang, Y.Sullivan, N.J.McLellan, J.S.

(2016) Science 351: 1343-1346

  • DOI: https://doi.org/10.1126/science.aad6117
  • Primary Citation Related Structures: 
    5FHA, 5FHB, 5FHC

  • PubMed Abstract: 

    Ebola virus causes hemorrhagic fever with a high case fatality rate for which there is no approved therapy. Two human monoclonal antibodies, mAb100 and mAb114, in combination, protect nonhuman primates against all signs of Ebola virus disease, including viremia. Here, we demonstrate that mAb100 recognizes the base of the Ebola virus glycoprotein (GP) trimer, occludes access to the cathepsin-cleavage loop, and prevents the proteolytic cleavage of GP that is required for virus entry. We show that mAb114 interacts with the glycan cap and inner chalice of GP, remains associated after proteolytic removal of the glycan cap, and inhibits binding of cleaved GP to its receptor. These results define the basis of neutralization for two protective antibodies and may facilitate development of therapies and vaccines.


  • Organizational Affiliation
    • Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA. Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA. Division of Infectious Diseases, Boston Children's Hospital, Boston, MA 02215, USA.

Macromolecule Content 

  • Total Structure Weight: 139.92 kDa 
  • Atom Count: 8,854 
  • Modeled Residue Count: 1,182 
  • Deposited Residue Count: 1,286 
  • Unique protein chains: 6

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Envelope glycoproteinA [auth J]98Ebola virus - Mayinga, Zaire, 1976Mutation(s): 0 
Gene Names: GP
UniProt
Find proteins for Q05320 (Zaire ebolavirus (strain Mayinga-76))
Explore Q05320 
Go to UniProtKB:  Q05320
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ05320
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Envelope glycoprotein,Envelope glycoproteinB [auth K]322Ebola virus - Mayinga, Zaire, 1976Mutation(s): 0 
Gene Names: GP
UniProt
Find proteins for Q05320 (Zaire ebolavirus (strain Mayinga-76))
Explore Q05320 
Go to UniProtKB:  Q05320
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ05320
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Antibody 100 Fab heavy chainC [auth A]227Homo sapiensMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Antibody 100 Fab light chainD [auth B]207Homo sapiensMutation(s): 0 
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Antibody 114 Fab light chainE [auth L]212Homo sapiensMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Antibody 114 Fab heavy chainF [auth H]220Homo sapiensMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 6.70 Å
  • R-Value Free:  0.343 (Depositor), 0.331 (DCC) 
  • R-Value Work:  0.260 (Depositor), 0.275 (DCC) 
  • R-Value Observed: 0.265 (Depositor) 
Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 169.67α = 90
b = 169.67β = 90
c = 376.99γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
Cootmodel building

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-03-16
    Type: Initial release
  • Version 1.1: 2016-03-30
    Changes: Database references
  • Version 1.2: 2024-11-13
    Changes: Data collection, Database references, Derived calculations, Structure summary