5F9I | pdb_00005f9i

Crystal Structure of rich-AT DNA 20mer

• PDB DOI: https://doi.org/10.2210/pdb5F9I/pdb
• NAKB: 5F9I

• Classification: DNA
• Organism(s): synthetic construct
• Mutation(s): No 


• Deposited: 2015-12-09 Released: 2016-06-29 
• Deposition Author(s): Garcia, S., Acosta-Reyes, F.J., Saperas, N., Campos, J.L.
• Funding Organization(s): MICIN - FEDER, Generalitat de Catalunya

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 
  0.250 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.226 (Depositor), 0.230 (DCC) 
• R-Value Observed: 
  0.227 (Depositor) 

Literature

Crystal Structure of rich-AT DNA 20mer

Garcia, S., Acosta-Reyes, F.J., Saperas, N., Campos, J.L.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 24.53 kDa 
• Atom Count: 1,632 
• Modeled Residue Count: 80 
• Deposited Residue Count: 80 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*CP*CP*AP*AP*TP*AP*AP*TP*CP*GP*CP*GP*AP*TP*TP*AP*TP*TP*GP*G)-3')	A, B, C, D	20	synthetic construct

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free:  0.250 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.226 (Depositor), 0.230 (DCC) 
• R-Value Observed: 0.227 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.647	α = 90
b = 26.34	β = 95.98
c = 76.434	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2016-06-29 
Deposition Author(s): Garcia, S., Acosta-Reyes, F.J., Saperas, N., Campos, J.L.

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Funding Organization	Location	Grant Number
MICIN - FEDER	Spain	BFU-2009-10380
Generalitat de Catalunya	Spain	SRG2009-1208

Revision History  

• Version 1.0: 2016-06-29
  Type: Initial release
  
• Version 1.1: 2024-05-08
  Changes: Data collection, Database references