5ERW | pdb_00005erw

Structure of HCV E2 glycoprotein antigenic Epitope II bound to the broadly neutralizing antibody HC84-26

PDB DOI: https://doi.org/10.2210/pdb5ERW/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo sapiens, Orthohepacivirus hominis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-11-15 Released: 2016-11-16
Deposition Author(s): Gao, M., Mariuzza, R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.258 (Depositor), 0.256 (DCC)
R-Value Work:
0.215 (Depositor), 0.217 (DCC)
R-Value Observed:
0.220 (Depositor)

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This is version 1.1 of the entry. See complete history.

Literature

Structure of HCV E2 glycoprotein antigenic Epitope II bound to the broadly neutralizing antibody HC84-26

Gao, M., Mariuzza, R.

To be published.

Macromolecule Content

Total Structure Weight: 48.01 kDa
Atom Count: 3,368
Modeled Residue Count: 434
Deposited Residue Count: 444
Unique protein chains: 3

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Anti-HCV E2 Fab HC84-26 heavy chain	A	217	Homo sapiens	Mutation(s): 0

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Anti-HCV E2 Fab HC84-26 light chain	B	214	Homo sapiens	Mutation(s): 0

Find similar proteins by: Sequence | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
HCV E2 glycoprotein Epitope II	C	13	Orthohepacivirus hominis	Mutation(s): 0
UniProt
Find proteins for P27958 (Hepatitis C virus genotype 1a (isolate H77)) Explore P27958 Go to UniProtKB: P27958
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P27958
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.258 (Depositor), 0.256 (DCC)
R-Value Work: 0.215 (Depositor), 0.217 (DCC)
R-Value Observed: 0.220 (Depositor)

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.7	α = 90
b = 101.24	β = 90
c = 180.32	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing
PHENIX	refinement
Coot	model building
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-11-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-11-16
Type: Initial release
Version 1.1: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.