5EID | pdb_00005eid

AKR2A ankyrin repeat domain

PDB DOI: https://doi.org/10.2210/pdb5EID/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-10-29 Released: 2016-11-02
Deposition Author(s): Pu, H., Li, H.
Funding Organization(s): National Natural Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.235 (Depositor), 0.232 (DCC)
R-Value Work:
0.187 (Depositor), 0.189 (DCC)
R-Value Observed:
0.190 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

structure of AKR2A ankyrin repeat domain at 2.0 angstroms resolution

Pu, H., Li, H.

To be published.

Macromolecule Content

Total Structure Weight: 17.81 kDa
Atom Count: 928
Modeled Residue Count: 123
Deposited Residue Count: 168
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ankyrin repeat domain-containing protein 2	A	168	Arabidopsis thaliana	Mutation(s): 0 Gene Names: AKR2, AFT, At4g35450, F15J1.20
UniProt
Find proteins for Q9SAR5 (Arabidopsis thaliana) Explore Q9SAR5 Go to UniProtKB: Q9SAR5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9SAR5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.235 (Depositor), 0.232 (DCC)
R-Value Work: 0.187 (Depositor), 0.189 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 124.141	α = 90
b = 39.193	β = 96.29
c = 28.499	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
HKL-2000	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
PHENIX	model building

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2016-11-02

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation	China	31300634

Revision History (Full details and data files)

Version 1.0: 2016-11-02
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.