5EGI

Structure of a Trimeric Intracellular Cation channel from C. elegans with bound Ca2+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.30 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.263 

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This is version 2.0 of the entry. See complete history


Literature

Pore architecture of TRIC channels and insights into their gating mechanism.

Yang, H.T.Hu, M.H.Guo, J.L.Ou, X.M.Cai, T.X.Liu, Z.F.

(2016) Nature 538: 537-541

  • DOI: https://doi.org/10.1038/nature19767
  • Primary Citation of Related Structures:  
    5EGI, 5EIK

  • PubMed Abstract: 

    Intracellular Ca 2+ signalling processes are fundamental to muscle contraction, neurotransmitter release, cell growth and apoptosis. Release of Ca 2+ from the intracellular stores is supported by a series of ion channels in sarcoplasmic or endoplasmic reticulum (SR/ER). Among them, two isoforms of the trimeric intracellular cation (TRIC) channel family, named TRIC-A and TRIC-B, modulate the release of Ca 2+ through the ryanodine receptor or inositol triphosphate receptor, and maintain the homeostasis of ions within SR/ER lumen. Genetic ablations or mutations of TRIC channels are associated with hypertension, heart disease, respiratory defects and brittle bone disease. Despite the pivotal function of TRIC channels in Ca 2+ signalling, their pore architectures and gating mechanisms remain unknown. Here we present the structures of TRIC-B1 and TRIC-B2 channels from Caenorhabditis elegans in complex with endogenous phosphatidylinositol-4,5-biphosphate (PtdIns(4,5)P 2 , also known as PIP 2 ) lipid molecules. The TRIC-B1/B2 proteins and PIP 2 assemble into a symmetrical homotrimeric complex. Each monomer contains an hourglass-shaped hydrophilic pore contained within a seven-transmembrane-helix domain. Structural and functional analyses unravel the central role of PIP 2 in stabilizing the cytoplasmic gate of the ion permeation pathway and reveal a marked Ca 2+ -induced conformational change in a cytoplasmic loop above the gate. A mechanistic model has been proposed to account for the complex gating mechanism of TRIC channels.


  • Organizational Affiliation

    National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein Y57A10A.10
A, B, C
257Caenorhabditis elegansMutation(s): 0 
Gene Names: CELE_Y57A10A.10Y57A10A.10
Membrane Entity: Yes 
UniProt
Find proteins for Q9NA75 (Caenorhabditis elegans)
Explore Q9NA75 
Go to UniProtKB:  Q9NA75
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NA75
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.30 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.263 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 102.05α = 90
b = 102.05β = 90
c = 279.99γ = 90
Software Package:
Software NamePurpose
CNSrefinement
iMOSFLMdata reduction
SCALAdata scaling
AutoSolphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National 973 projectChina2014CB910301
Chinese Academy of SciencesChinaXDB08020302

Revision History  (Full details and data files)

  • Version 1.0: 2016-10-05
    Type: Initial release
  • Version 1.1: 2017-10-04
    Changes: Data collection, Derived calculations
  • Version 1.2: 2019-12-25
    Changes: Database references
  • Version 2.0: 2024-03-20
    Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary