5DV9

Crystal structure of the Luciferase

• PDB DOI: https://doi.org/10.2210/pdb5DV9/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Photinus pyralis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-09-21 Released: 2016-09-28 
• Deposition Author(s): Su, J., Li, Z., Yuan, Z., Gu, L.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.241 
• R-Value Work: 0.191 
• R-Value Observed: 0.195 

Literature

Crystal structure of the Luciferase

Su, J., Li, Z., Yuan, Z., Gu, L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 63.37 kDa 
• Atom Count: 4,421 
• Modelled Residue Count: 541 
• Deposited Residue Count: 573 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Luciferin 4-monooxygenase	A	573	Photinus pyralis	Mutation(s): 0  EC: 1.13.12.7
UniProt
Find proteins for P08659 (Photinus pyralis) Explore P08659  Go to UniProtKB:  P08659

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.241 
• R-Value Work: 0.191 
• R-Value Observed: 0.195 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 117.967	α = 90
b = 117.967	β = 90
c = 95.681	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-09-28 
Deposition Author(s): Su, J., Li, Z., Yuan, Z., Gu, L.

Revision History  

• Version 1.0: 2016-09-28
  Type: Initial release
  
• Version 1.1: 2024-03-20
  Changes: Data collection, Database references, Derived calculations