5DM5

Crystal structure of the hexameric thioesterase y2039 from Yersinia pestis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.230 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of the hexameric thioesterase y2039 from Yersinia pestis

Swarbrick, C.M.D.Forwood, J.K.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative acyl-CoA thioester hydrolase
A, B, C, D, E
A, B, C, D, E, F
152Yersinia pestisMutation(s): 0 
Gene Names: y2039YPO2195
EC: 3.1.2
UniProt
Find proteins for A0A5P8YGN6 (Yersinia pestis)
Explore A0A5P8YGN6 
Go to UniProtKB:  A0A5P8YGN6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5P8YGN6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.230 
  • Space Group: P 65
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.87α = 90
b = 77.87β = 90
c = 285.26γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
PHASERphasing
MOSFLMdata reduction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-11-11
    Type: Initial release
  • Version 1.1: 2017-08-23
    Changes: Data collection, Derived calculations
  • Version 1.2: 2023-09-27
    Changes: Data collection, Database references, Refinement description