5DGX

1.73 Angstrom resolution crystal structure of the ABC-ATPase domain (residues 357-609) of lipid A transport protein (msbA) from Francisella tularensis subsp. tularensis SCHU S4 in complex with ADP

• PDB DOI: https://doi.org/10.2210/pdb5DGX/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Francisella tularensis subsp. tularensis FSC198
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-08-28 Released: 2015-09-16 
• Deposition Author(s): Halavaty, A.S., Minasov, G., Dubrovska, I., Kiryukhina, O., Grimshaw, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.73 Å
• R-Value Free: 0.233 
• R-Value Work: 0.194 
• R-Value Observed: 0.196 

Starting Model: experimental

Literature

1.73 Angstrom resolution crystal structure of the ABC-ATPase domain (residues 357-609) of lipid A transport protein (msbA) from Francisella tularensis subsp. tularensis SCHU S4 in complex with ADP

Halavaty, A.S., Minasov, G., Dubrovska, I., Kiryukhina, O., Grimshaw, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 28.27 kDa 
• Atom Count: 2,064 
• Modelled Residue Count: 233 
• Deposited Residue Count: 256 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lipid A export ATP-binding/permease protein MsbA	A	256	Francisella tularensis subsp. tularensis FSC198	Mutation(s): 0  Gene Names: msbA, FTF0109 EC: 3.6.3 (PDB Primary Data), 7.5.2.6 (UniProt)
UniProt
Find proteins for Q14JW6 (Francisella tularensis subsp. tularensis (strain FSC 198)) Explore Q14JW6  Go to UniProtKB:  Q14JW6

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ADP	B [auth A]	ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.73 Å
• R-Value Free: 0.233 
• R-Value Work: 0.194 
• R-Value Observed: 0.196 
• Space Group: P 1 2₁ 1
• Diffraction Data: https://doi.org/10.18430/m35dgx

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.597	α = 90
b = 70.886	β = 103.77
c = 46.647	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
BALBES	phasing
Coot	model building
ARP	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-09-16 
Deposition Author(s): Halavaty, A.S., Minasov, G., Dubrovska, I., Kiryukhina, O., Grimshaw, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2015-09-16
  Type: Initial release
  
• Version 1.1: 2023-09-27
  Changes: Data collection, Database references, Derived calculations, Refinement description