CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII
Gabdulkhakov, A.G., Mitroshin, I.V., Garber, M.B.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L10 | 213 | Methanocaldococcus jannaschii | Mutation(s): 0  Gene Names: rpl10, rplP0, MJ0509 | ||
UniProt | |||||
Find proteins for P54049 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)) Explore P54049  Go to UniProtKB:  P54049 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P54049 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L11 | 161 | Methanocaldococcus jannaschii | Mutation(s): 0  Gene Names: rpl11, MJ0373 | ||
UniProt | |||||
Find proteins for P54030 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)) Explore P54030  Go to UniProtKB:  P54030 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P54030 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
74 nt fragment of 23S rRNA | 74 | Methanocaldococcus jannaschii | |||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
K Query on K | M [auth A], N [auth A], P [auth C], T [auth D], V [auth F] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N | |||
CL Query on CL | L [auth A], O [auth B], U [auth F] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG Query on MG | G [auth A] H [auth A] I [auth A] J [auth A] K [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 72.396 | α = 90 |
b = 88.451 | β = 102.19 |
c = 95.231 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
PROTEUM PLUS | data reduction |
PROTEUM PLUS | data scaling |
PHASER | phasing |