5DA1 | pdb_00005da1

A Dimerization-Dependent Mechanism Drives PRRSV NSP11 Functions As a Beta Interferon Antagonist and Endoribonuclease

PDB DOI: https://doi.org/10.2210/pdb5DA1/pdb

Classification: HYDROLASE
Organism(s): Porcine reproductive and respiratory syndrome virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-08-19 Released: 2016-03-09
Deposition Author(s): Shi, Y., Peng, G.
Funding Organization(s): Major State Basic Research Development Program

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free:
0.282 (Depositor), 0.281 (DCC)
R-Value Work:
0.211 (Depositor), 0.226 (DCC)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

A Dimerization-Dependent Mechanism Drives PRRSV NSP11 Functions As a Beta Interferon Antagonist and Endoribonuclease

Shi, Y., Peng, G.

To be published.

Macromolecule Content

Total Structure Weight: 51.44 kDa
Atom Count: 3,400
Modeled Residue Count: 427
Deposited Residue Count: 458
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
endoribonuclease	A, B	229	Porcine reproductive and respiratory syndrome virus	Mutation(s): 0
UniProt
Find proteins for E3V2B6 (Porcine reproductive and respiratory syndrome virus) Explore E3V2B6 Go to UniProtKB: E3V2B6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	E3V2B6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free: 0.282 (Depositor), 0.281 (DCC)
R-Value Work: 0.211 (Depositor), 0.226 (DCC)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.317	α = 90
b = 77.317	β = 90
c = 204.693	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2016-03-09

Deposition Author(s):

Funding Organization	Location	Grant Number
Major State Basic Research Development Program	China	2014CB542700

Revision History (Full details and data files)

Version 1.0: 2016-03-09
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.